Bacteriorhodopsin 3D structures

3D Structures of bacteriorhodopsin

Updated on 25-October-2022

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• Bacteriorhodopsin
  • 1bct - HsBr residues 163-231 – Halobacterium salinarum - NMR
    
  • 1bha, 1bhb - HsBr residues 1-71 - NMR
    
  • 7vso, 7z09, 7z0a, 7z0c, 7z0d, 7z0e - HsBr residues 14-261
    
  • 7q35, 7q38 - HsBr residues 14-261(mutant)
    
  • 1l0m– Br (mutant) – Halobacterium halobium – NMR
    
  • 4pxk - Br (mutant) – Haloarcula marismortui
    
  • 4qi1, 4qid, 5itc, 5ite, 5kkh – HwBr-I – Haloquadratum walsbyi
    
  • 4wav – HwBr-I (mutant)
    
  • 5azd – Br – Thermus thermophilus
    
• Bacteriorhodopsin complexes
  • 2ntu, 1py6, 1fbb, 1fbk, 1brx, 1ap9, 1at9, 5br2, 5br5 - HsBr + retinal
    
  • 1brd - HsBr + retinal – Cryo EM
    
  • 2wjk, 2wjl, 3vhz, 1s8l, 3t45 - HsBr (mutant) + lipid + retinal
    
  • 3han, 2hao, 3hap, 3haq, 3har, 3has, 3coc, 3cod, 1tn5, 1tn0, 1s51, 1s52, 1s53, 1s54, 1q5i, 1q5j, 1pxr, 1pxs, 3hao, 3utv, 3utw, 3utx, 3uty - HsBr (mutant) + retinal
    
  • 4md1, 4md2, 4ov0, 5vn7, 5vn9 - HsBr + lipid
    
  • 3ns0, 3nsb, 3mbv, 1x0s, 1x0i, 1x0k, 1xji, 1iw6, 4fpd, 2i1x, 1kme, 1qm8, 1bm1, 1brr, 2brd, 4hyx, 4xxj, 4y9h, 5a44, 5a45, 5b34, 5b35, 5b6v, 5b6w, 5b6x, 5b6y, 5b6z, 5h2h, 5h2i, 5h2j, 5h2k, 5h2l, 5h2m, 5h2n, 5h2o, 5h2p, 5j7a, 6g7h, 6g7i, 6g7j, 6g7k, 6g7l, 4x31, 4x32, 1c3w, 5zil, 5zim, 5zin, 6ga1, 6ga2, 6ga3, 6ga4, 6ga5, 6ga6, 6ga7, 6ga8, 6ga9, 6gaa, 6gab, 6gac, 6gad, 6gae, 6gaf, 6gag, 6gah, 6gai, 6rmk, 6rnj, 6rph, 6rqo, 6rqp – HsBr + lipid + retinal
    
  • 2at9 - HsBr + lipid + retinal – Cryo EM
    
  • 1s8j- HsBr (mutant) + lipid + NO3 + retinal
    
  • 1mgy - HsBr (mutant) + lipid + Br + retinal
    
  • 1qhj - HsBr + phytanyl derivavative + retinal
    
  • 4hwl – HsBr + heptane + hexane + retinal
    
  • 4hwl – HsBr + decane + hexane + tetradecane + octane + retinal
    
  • 1r84, 1r2n - HsBr + retinal – NMR
    
  • 1f50, 1c8r - HsBr-BR (mutant) + lipid + retinal
    
  • 1m0k, 1m0l, 1ixf, 2zfe- HsBr-K + lipid + retinal
    
  • 1e0p, 2ntw, 1vjm - HsBr-L + retinal
    
  • 1ucq, 1iw9, 1o0a – HsBr-L + lipid + retinal
    
  • 1kg8, 1kg9, 1kgb, 1dze, 1cwq, 2zzl, 2i20, 2i21, 1p8h, 1m0m - HsBr-M + lipid + retinal
    
  • 1f4z, 1c8s, 1p8i - HsBr-M (mutant) + lipid + retinal
    
  • 1p8u – HsBr-N (mutant) + lipid + retinal
    
  • 1jv6, 1jv7, 3vi0 - HsBr-O (mutant) + lipid + retinal
    
  • 1qko, 1qkp - HsBr + retinal
    
  • 5jsi, 7avn, 7avo, 7avp, 7q37 – Br + lipid – Candidatus actinomarina
    
  • 5uk6 – Br + lipid – Nostoc - NMR
    
• Halorhodopsin
  • 3abw, 3vvk – NpBr+ N3 + bacterioruberin + detergent + retinal – Natronomonas pharaonis
    
  • 3a7k – NpBr + bacterioruberin + detergent + retinal + Cl
    
  • 3qbg, 3qbi, 3qbk, 3qbl, 5etz - NpBr + bacterioruberin + detergent + retinal
    
  • 5b0w - NpBr + bacterioruberin + detergent + retinal + Ile
    
  • 4qry - NpBr + Br + detergent + retinal
    
  • 5ahy, 5ahz, 5g36 - HsBr + detergent + retinal + Cl
    
  • 2jaf, 2jag, 1e12 - HsBr (mutant) + lipid+ retinal + Cl
    
• Sensory rhodopsin II
  • 1jgj - NpBr + retinal
    
  • 2ksy – NpBr + retinal – NMR
    
  • 2f93, 2f95, 1h2s - BpBr + Br transducer + detergent + retinal
    
  • 3qap, 3qdc - NpBr + eicosane + lipid + retinal
    
  • 4gyc, 5jje, 5jjf, 5jjj, 5jjn - NpBr + retinal + eicosane + lipid + Br transducer
    
  • 1gu8, 1gue, 1h68 - NpBr + retinal + Cl
    
  • 1xio - AnBr + detergent + retinal - Anabaena
    
  • 4tl3 - AnBr (mutant) + detergent + retinal
    
  • 2m3g - AnBr + retinal - NMR
    
• Xanthorhodopsin
  • 3ddl – Br + detergent + salinixanthin + retinal – Salinibacter ruber
• Archaerhodopsin
  • 2ei4, 2z55 – HaBr + bacterioruberin + detergent + retinal – Halobacterium
    
  • 1vgo - HaBr + detergent + retinal
    
  • 1uaz - HaBr + retinal
    
  • 6gux, 6guy, 6guz, 6s63 - Br + retinal- Halorubrum sodomense
    
• Blue-light absorbing proteorhodopsin
  • 4kly, 4knf - GpPRn + retinal
    
  • 4jq6 – PRn + retinal + lipid - uncultured bacteria
    
• Green-light absorbing proteorhodopsin
  • 2l6x - GpPRn + detergents + retinal – Gamma proteobacterium
    
  • 7b03 - GpPRn + retinal – Cryo EM
    
  • 5abb – PRn residues 19-83 + protein translocase – Escherichia coli
    
• Deltarhodopsin
  • 4fbz - Rn + bacterioruberin + retinal – Haloterrigena thermotolerans
    
• Xenorhodopsin
  • 6eyu - Rn + eicosane + lipid + retinal – Nanosalina
    
• Bacteriorhodopsin-like
  • 7w74 - BrL + lipid + retinal – Pseudomonas putida
    

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Michal Harel, Jaime Prilusky