3vn3 | pdb_00003vn3

Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix

spinqualitylabelsall models 3vn3, resolution 0.95Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 3vn3 is a 2 chain structure with sequence from Typhula ishikariensis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 0.95Å Ligands: EDO, IYR Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function IBPKB_TYPIS Binds to the surface of ice crystals. Has low thermal hysteresis (TH) activity, which is the ability to lower the freezing point of an aqueous solution below its melting point (PubMed:22645341). The TH activity of this protein is approximately 0.3 degrees Celsius at 11 mM (PubMed:27613857). Publication Abstract from PubMed Antifreeze proteins (AFPs) are found in organisms ranging from fish to bacteria, where they serve different functions to facilitate survival of their host. AFPs that protect freeze-intolerant fish and insects from internal ice growth bind to ice using a regular array of well-conserved residues/motifs. Less is known about the role of AFPs in freeze-tolerant species, which might be to beneficially alter the structure of ice in or around the host. Here we report the 0.95-A high-resolution crystal structure of a 223-residue secreted AFP from the snow mold fungus Typhula ishikariensis. Its main structural element is an irregular beta-helix with six loops of 18 or more residues that lies alongside an alpha-helix. beta-Helices have independently evolved as AFPs on several occasions and seem ideally structured to bind to several planes of ice, including the basal plane. A novelty of the beta-helical fold is the nonsequential arrangement of loops that places the N- and C termini inside the solenoid of beta-helical coils. The ice-binding site (IBS), which could not be predicted from sequence or structure, was located by site-directed mutagenesis to the flattest surface of the protein. It is remarkable for its lack of regularity and its poor conservation in homologs from psychrophilic diatoms and bacteria and other fungi. Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation.,Kondo H, Hanada Y, Sugimoto H, Hoshino T, Garnham CP, Davies PL, Tsuda S Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9360-5. Epub 2012 May 29. PMID:22645341 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Antifreeze protein Antifreeze protein 3D structures

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