User:Angel Herraez/Sandbox 11

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A survey of the data in the Transaldolase revealed that the NOS bond likely exists "in diverse protein families across all domains of life (including Homo sapiens)


2026

Education & Communication

[1]

  1. ↑ Slanináková T, Charlop-Powers Z, Doshchenko V, Rose AS, Midlik A, Sekuła A, Fonseca N, Morris KL, Burley SK, Velankar S, Fleming J, Vallat B, Autin L, Sehnal D. MolViewStories: Interactive molecular storytelling. Protein Sci. 2026 Apr;35(4):e70540. PMID:41854287 doi:10.1002/pro.70540

BioMedical Research

  1. Weber H, Ehinger A, Kolb D, Fallahzadeh-Mamaghani V, Halter T, Contreras MP, Franz M, Schäfer N, Zur Oven-Krockhaus S, Gronnier J, Oecking C, Zipfel C, Harter K, Kemmerling B. The Arabidopsis SPFH protein HIR2 modulates receptor signaling and plasma membrane organization. The EMBO journal. 2026 Jul 29. doi: 10.1038/s44318-026-00877-y. PMID: 42527684.
  1. Gordils-Valentin L, Belobrajdic J, Zhu X. Structural basis for TrbM-enhanced conjugation and interbacterial killing in the RP4 plasmid. iScience. 2026 Jun 18;29(7):116436. PMID:42375539 doi:10.1016/j.isci.2026.116436
  1. Paulson AR, Montoya V, Joy JB. Functional Genomic Evidence for Candidate Small Viral RNA-Mediated Epigenetic Interference in SARS-CoV-1 and SARS-CoV-2. Comput Struct Biotechnol J. 2026 Jul 2;35(1):0148. PMID:42395897 doi:10.34133/csbj.0148
  1. Mohamed RA, Huitao S, Si M, Jinguan Z, Mabrouk MS. An End-to-End Modular Blueprint for Rapid mRNA Vaccine Development, Computational Design, Functional Validation, and Scalable Delivery Against Evolving Pathogens. In Silico Pharmacol. 2026 Jun 22;14(2):173. PMID:42344113 doi:10.1007/s40203-026-00674-9
  1. Peterson MR, Au S, Ho AN, Liu H. Regulation of hyphal development by protein kinase A, stress-responsive MAP kinases, and calcineurin via transcription factors Sfl1 and Sfl2 in Candida albicans. mSphere. 2026 Feb 24;11(2):e0068925. PMID:41504448 doi:10.1128/msphere.00689-25

2021-2025

Education & Communication

  1. Mokos D, Daniel B. Interactive 3D Objects Enhance Scientific Communication of Structural Data. Chembiochem. 2025 Mar 15;26(6):e202500036. PMID:39976303 doi:10.1002/cbic.202500036
  1. Rose A, Sehnal D, Goodsell DS, Autin L. Mesoscale explorer: Visual exploration of large-scale molecular models. Protein Sci. 2024 Oct;33(10):e5177. PMID:39291955 doi:10.1002/pro.5177
  1. Procko K, Bakheet S, Beckham JT, Franzen MA, Jakubowski H, Novak WRP. Modeling an Enzyme Active Site using Molecular Visualization Freeware. J Vis Exp. 2021 Dec 25;(178). PMID:35001912 doi:10.3791/63170

BioMedical Research

2025

  1. Paulson AR, O'Callaghan M, Zhang XX, Naren N, Schoof M, Hurst MRH. Two transcription factors and one antisense RNA underlie the thermoregulated insect pathogenicity of Yersinia entomophaga MH96. Gene. 2025 Dec 11;980:149955. PMID:41390121 doi:10.1016/j.gene.2025.149955
  1. Bailo R, Kumar CMS, Singh A, Lund PA, Bavro VN, Bhatt A. MmpL12 transports lipooligosaccharides and impacts virulence in Mycobacterium marinum. Microbiology (Reading). 2025 Oct;171(10):001618. PMID:41060696 doi:10.1099/mic.0.001618

For AlphaFold3-predicted structures, "Average pLDDT scores were calculated using FirstGlance in Jmol."

  1. Karmakar S, Selvaraj S, Mondal S, Gayen D, Baig MJ. Multi-omics reveals DEAD-box RNA helicase 20 as key protein enhancing wilt resistance in transgenic chickpea. Plant Cell Rep. 2025 Dec 3;44(12):289. PMID:41331102 doi:10.1007/s00299-025-03675-8
  1. Liu YY, Zhang TT, Zhao Y, Li NW, Malhi KK, Yao X, Li JL. Maternal antibodies to Bartha-K61 vaccine did not protect newborn piglets from challenge with novel recombinant pseudorabies virus. Vet J. 2025 Dec;314:106463. PMID:41047069 doi:10.1016/j.tvjl.2025.106463
  1. Noureddine J, Nair AM, Espinosa KA, Fan L, Cheng J, Zhao R. Pre-N and C-terminal extension regions of Arabidopsis HSP90.7 regulate the chaperone activity and ER stress response. J Biol Chem. 2025 Oct 8;301(12):110806. PMID:41072766 doi:10.1016/j.jbc.2025.110806
  1. García E. Structure, Function, and Regulation of LytA: The N-Acetylmuramoyl-l-alanine Amidase Driving the "Suicidal Tendencies" of Streptococcus pneumoniae-A Review. Microorganisms. 2025 Apr 5;13(4):827. PMID:40284663 doi:10.3390/microorganisms13040827
  1. Gupta M, Kumar H, Debbarma A, Kaur S. Unraveling the abundance of vip3-type genes in Indian Bacillus thuringiensis across the agroclimatic landscape and impact of amino acid substitutions for safer agriculture. Gene. 2025 Jan 15;933:148953. PMID:39299531 doi:10.1016/j.gene.2024.148953
  1. Yao X, Lu WH, Qiao WT, Zhang YQ, Zhang BY, Li HX, Li JL. The highly pathogenic strain of porcine deltacoronavirus disrupts the intestinal barrier and causes diarrhea in newborn piglets. Virulence. 2025 Dec;16(1):2446742. PMID:39758030 doi:10.1080/21505594.2024.2446742

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Angel Herraez

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