9byu

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Structure and stability of an apo thermophilic esterase that hydrolyzes polyhydroxybutyrate

Structural highlights

9byu is a 1 chain structure with sequence from Lihuaxuella thermophila. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.75Å
Ligands:MG, TRS
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A1H8IKU3_9BACL

Publication Abstract from PubMed

Pollution from plastics is a global problem that threatens the biosphere for a host of reasons, including the time scale that it takes for most plastics to degrade. Biodegradation is an ideal solution for remediating bioplastic waste as it does not require the high temperatures necessary for thermal degradation and does not introduce additional pollutants into the environment. Numerous organisms can scavenge for bioplastics, such as polylactic acid (PLA) or poly-(R)-hydroxybutyrate (PHB), which they can use as an energy source. Recently, a promiscuous PHBase from the thermophilic soil bacterium Lihuaxuella thermophila (LtPHBase) was identified. LtPHBase can accommodate many substrates, including PHB granules and films and PHB block copolymers, as well as the unrelated polymers polylactic acid (PLA) and polycaprolactone (PCL). LtPHBase uses the expected Ser-His-Asp catalytic triad for hydrolysis at an optimal enzyme activity near 70 degrees C. Here, the 1.75 A resolution crystal structure of apo LtPHBase is presented and its chemical stability is profiled. Knowledge of its substrate preferences was extended to different-sized PHB granules. It is shown that LtPHBase is highly resistant to unfolding, with barriers typical for thermophilic enzymes, and shows a preference for low-molecular-mass PHB granules. These insights have implications for the long-term potential of LtPHBase as an industrial PHB hydrolase and shed light on the evolutionary role that this enzyme plays in bacterial metabolism.

Structure and stability of an apo thermophilic esterase that hydrolyzes polyhydroxybutyrate.,Thomas GM, Quirk S, Lieberman RL Acta Crystallogr D Struct Biol. 2024 Nov 1. doi: 10.1107/S2059798324009707. PMID:39441250[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Thomas GM, Quirk S, Lieberman RL. Structure and stability of an apo thermophilic esterase that hydrolyzes polyhydroxybutyrate. Acta Crystallogr D Struct Biol. 2024 Nov 1. PMID:39441250 doi:10.1107/S2059798324009707

Contents


PDB ID 9byu

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