Adhesin 3D structures

3D Structures of Adhesin

Updated on 12-September-2024

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• Fimbrial adhesin; lectin domain 22-185
  • 6yhw – EcAdh FimH – Escherichia coli
    
  • 4k0o, 2bs8, 2bsc, 2bsb, 5nwp, 7mzp – EcF17b-G lectin domain
    
  • 1o9z, 1o9w, 1o9v – EcF17a-G lectin domain
    
  • 5vq5 – EcF17 lectin domain (mutant)
    
  • 1oio – EcF17c lectin domain
    
  • 4b4p, 4bwo – EcF18 lectin domain
    
  • 4auu, 1uwf, 1tr7, 5fwr, 8bvd, 8bxy, 8by3 – EcAdh FimH lectin domain
    
  • 5mca, 5fx3, 5fs5, 7ayn – EcAdh FimH lectin domain (mutant)
    
  • 5afo – EcAdh LF82
    
  • 6aow – EcAdh FMLH lectin domain
    
  • 3zk7 – SpPsaA - Streptococcus pneumoniae
    
  • 3zk8, 3zk9, 3zka – SpPsaA (mutant)
    
  • 3u4k – Adh lectin domain – Klebsiella pneumoniae
    
  • 6h1q, 7mzo – PmAdh – Proteus mirabilis
    
  • 8df0 – Adh – Acinetobacter baumannii
    
• Fimbrial adhesion complexes
  • 4b4q, 4b4r – EcF18 lectin domain + hexasaccharide
    
  • 4w6w, 4w6x, 4w6y – EcF18 lectin domain + nanobody
    
  • 7szo – EcAdh FimC + FimF + FimG + FimH
    
  • 4j3o – EcAdh FimH + FimG + FimC + FimF + FimD
    
  • 6e14, 6e15 – EcAdh FimH + FimG + FimC + FimF + FimD - Cryo EM
    
  • 3rfz, 1ze3 – EcAdh FimH + FimC + FimD
    
  • 1qun, 1klf, 1kiu – EcAdh FimH + FimC
    
  • 4xo9 – EcAdh FimH + DSG residues 24-37
    
  • 4xod, 4xoa – EcAdh FimH + FimG residues 24-37
    
  • 7q3n – EcAdh FimH + uromodulin - Cryo EM
    
  • 6g2r, 6g2s, 7bhd – EcAdh FimH lectin domain + mannoside derivative
    
  • 4xob – EcAdh FimH + FimF residues 24-37 + mannoside derivative
    
  • 5jr4, 5jqi – EcAdh FimH (mutant) + FimG N-terminal
    
  • 6as8, 6arm, 6aoy, 6map, 6maq, 6maw – EcAdh FMLD lectin domain + galactoside derivative
    
  • 6aox – EcAdh FMLD lectin domain + TF antigen
    
  • 6aro – EcAdh FMLH lectin domain + quinoline derivative
    
  • 5muc, 5l4y, 5l4x, 5l4w, 5l4v, 5l4u, 5l4t, 5jcq, 5jcr, 5f2f, 5f3f, 5abz, 4xo8, 4x5p, 4x5q, 4x5r, 4lov, 4css, 4cst, 4att, 4auj, 4auy, 4av0, 4av4, 4av5, 4avh, 4avi, 4avj, 4avk, 3zl1, 3zl2, 2vco, 6gtw, 6gtx, 6gty – EcAdh FimH lectin domain + mannoside derivative
    
  • 6gtv, 6gtz, 6gu0 – EcAdh FimH lectin domain + Adh FimG + mannoside derivative
    
  • 5cgb – EcAdh FimH lectin domain + galactitol
    
  • 6yhw, 4x50 – EcAdh FimH + mannoside derivative
    
  • 5aap, 5aal, 5mts – EcAdh FimH lectin domain + anti-adhesive
    
  • 3f6j, 3f64, 1zpl, 1zk5 – EcF17a-G lectin domain + GlcNAc derivative
    
  • 2vqi, 3fip – EcAdh PapC
    
  • 3l48 – EcAdh PapC C-terminal
    
  • 2kt6 – EcAdh PapC C-terminal - NMR
    
  • 6cd2 – EcAdh PapC + PapD + PapG
    
  • 7lhg, 7lhh – EcAdh PapC + PapD + PapG + PapK - Cryo EM
    
  • 7lhi – EcAdh PapC + PapD + PapG + PapK + fimbrial protein - Cryo EM
    
  • 1psz – SpPsaA + Zn – Streptococcus pneumonia
    
  • 3ztt – SpPsaA + Mn
    
  • 4utp, 4uto – SpPsaA + Cd
    
  • 6y4f – PmAdh + Glu + Zn
    
  • 6y4e – PmAdh + tartarate + Zn
    
  • 7mzq, 7mzr, 7mzs – PmAdh UcaD + sugar
    
  • 2bs7 – EcF17b-G lectin domain + chitobiose
    
  • 3ffo – EcF17b-G lectin domain + GlcNac-Man
    
  • 4b4q, 4b4r – EcFedF lectin domain + hexasaccharide
    
  • 4w6w, 4w6x, 4w6y – EcFedF lectin domain + nanobody
    
  • 4f8l – YpPsaA + galactose + inhibitor – Yersinia pestis
    
  • 4f8n – YpPsaA + galactose + phosphate choline
    
  • 4f8o – YpPsaA + lactose + inhibitor
    
  • 4f8p – YpPsaA + galactose
    
• Epithelial adhesin
  • 4d3w, 4asl, 4af9 – CgAdh epithelial 1 A domain – Candida glabrata
    
  • 4afc, 4afb, 4afa – CgAdh epithelial 1 A domain (mutant)
    
  • 4cp2, 4cp1, 4cp0 – CgAdh epithelial 9 A domain
    
  • 4coz, 4coy, 4cow, 4cov, 4cou – CgAdh epithelial 6 A domain
    
• Collagen adhesin (CAdh)
  • 1amx – SaCAdh CBD – Staphylococcus aureus
    
  • 1d2o – SaCAdh B1 repeat unit
    
  • 1d2p – SaCAdh B1-B2 repeat units
    
  • 2f68 – SaCAdh extracellular domain
    
  • 2f6a – SaCAdh extracellular domain + collagen
    
  • 2okm, 2z1p – CAdh CBD – Enterococcus faecalis
    
  • 1p9h – YeYadA CBD – Yersinia enterocolitica
    
  • 3h7x – YeYadA stalk domain
    
  • 3h7z – YeYadA stalk domain (mutant)
    
  • 3lt6, 3lt7 – YeYadA coiled coil
    
  • 2lme – YeYadA coiled coil - NMR
    
  • 7lgr – SmAdh 167-326 – Streptococcus mutans
    
  • 8jl8 – SmAdh 31-326
    
  • 7k1u – Adh 206-565 – Clostridioides difficile
    
  • 6fwv – Adh – Bacillus anthracis
    
• Serine-rich adhesin for platelets (SRAP)
  • 4m00 – SaSRAP LBD
    
  • 4m01 – SaSRAP LBD N-terminal
    
  • 4m02 – SaSRAP LBD middle region
    
  • 4m03 – SaSRAP LBD C-terminal
    
• Adhesin from Mycoplasma genitalium
  • 6rcd – MgAdh P140 C domain – Mycoplasma genitalium
    
  • 6s3u – MgAdh P140
    
  • 5ox7 – MgAdh P110
    
  • 6r3t, 6se5, 6se7 – MgAdh P110 (mutant)
    
  • 6rj1 – MgAdh P110 N domain
    
  • 6r41, 6r43 – MgAdh P110 + sialic acid
    
  • 6tlz, 6tm0 – MgAdh P110 N domain + sialic acid
    
  • 6rut, 6yrk, 8pbx, 8pby – MgAdh P110 + P140 – Cryo EM
    
  • 8pbz, 8pc0 , 8pc1 – MgAdh P1 + MGP3 – Cryo EM
    
• Adhesin
  • 2odl, 2gr8, 2gr7 – HiAdh secretion domain – Haemophilus influenzae
    
  • 3emf – HiAdh residues 51-166
    
  • 3emi – HiAdh residues 307-422 (mutant)
    
  • 1s7m – HiAdh residues 548-706
    
  • 3emo – HiAdh residues 937-1098
    
  • 4zh7, 4zh0, 6gmm – HpAdh BABA – Helicobacter pylori
    
  • 7zqt – HpAdh BABA + antibody
    
  • 8t8d – HpAdh A
    
  • 4usx – Adh trimeric autotransporter – Burkholderia pseudomallei
    
  • 3wqa, 3wpr, 3wpp, 3wpo, 3wpa – AcAdh trimeric autotransporter C-terminal – Acinetobacter
    
  • 3wp8 – AcAdh trimeric autotransporter C-terminal (mutant)
    
  • 4err – VvAdh autotransporter effector domain – Vibrio vulnificus
    
  • 8sfg – VvAdh autotransporter effector domain (mutant)
    
  • 2wps, 2wpr, 2wpq – Adh trimeric autotransporter residues 483-523 – Salmonella enterica
    
  • 4tsh – SmAdh surface protein
    
  • 4mee – EcAdh diffuse adherence C-terminal
    
  • 5lvy – EcAdh lectin domain
    
  • 3etw – FnAdh A – Fusobacterium nucleatum
    
  • 3etz, 3ety, 3etx, 2gl2 – FnAdh A (mutant)
    
  • 3d9x – Adh A – Bartonella henselae
    
  • 2lwb – Adh WI-1 – Ajellomyces dermatitidis
    
  • 5my7 – NmAdh residues 1-124 – Neisseria meningitidis
    
  • 6eun – NmAdh residues 24-170
    
  • 6eup – NmAdh residues 24-170 (mutant)
    
  • 6gq4 – Adh residues 83-185 – Neisseria gonorheae
    
  • 6rc9, 6rcc, 6s3u – MpAdh P1 – Mycoplasma pneumoniae
    
  • 7bwm – MpAdh P1 – Cryo EM
    
  • 6vs7 – SsAdh sialic acid-binding domain - Streptococcus sanguinis
    
  • 6vt2, 6vu6 – SsAdh sialic acid-binding domain + sialic acid
    
  • 6szc – SgAdh repeat domain 13 - Streptococcus gordonii - NMR
    
  • 6tzl, 6ubv – SgAdh
    
  • 8p0o, 8p0p – AaAdh + UDP – Aggregatibacter aphrophilus
    
  • 8p0q – AaAdh + UDP + peptide
    
  • 8fha – SiAdh repeat domain 1 623-772 – Suipraeoptans intestinalis
    
  • 8f90 – SiAdh repeat domain 2 883-1031
    
  • 8dj2 – Adh 764-916 – Chlamydia trachomatis
    
  • 8f9l – Adh stalk domain 329-480 – Gemella massiliensis
    

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Michal Harel, Joel L. Sussman