Uploads by Karsten Theis
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 02:27, 12 October 2025 | MOFhexagonal.png (file) |  |
322 KB | CSD Entry: QEKBAK | 1 |
| 19:34, 2 June 2025 | 1msw legend.png (file) |  |
1,013 KB | 1 | |
| 16:57, 2 June 2025 | 1MSW butterfly.png (file) |  |
1.58 MB | 1 | |
| 02:02, 21 May 2025 | Uvrb fancy.spt (file) |  |
1 KB | 2 | |
| 16:00, 9 May 2025 | Molecular playground helpers.spt (file) | |
820 bytes | 2 | |
| 14:24, 6 May 2025 | Cellulose.spt (file) | |
3 KB | Molecular Playground script, cellulose | 1 |
| 14:07, 6 May 2025 | Cellulose.pngj (file) |  |
181 KB | Opening scene for cellulose molecular playground exhibit. | 1 |
| 15:28, 3 May 2025 | UvrB tour.spt (file) | |
1 KB | 3 | |
| 14:59, 3 May 2025 | UvrB 1d9z.spt (file) | |
282 bytes | With banner | 2 |
| 14:43, 3 May 2025 | Benzene cyclohexane.spt (file) | |
1 KB | Loads and calls helper functions now; works onsite, offsite, and offline (assuming the PNGJ and the helper file are in the same directory). | 3 |
| 13:37, 3 May 2025 | Uvrb 1d9z.pngj (file) |  |
173 KB | Example pngj file | 1 |
| 20:52, 1 May 2025 | Hexes2.pngj (file) |  |
143 KB | pngj file with benzene and hexane | 1 |
| 12:17, 10 April 2025 | Storymorph.spt (file) | |
16 KB | 15 | |
| 18:57, 31 March 2025 | 1a1v on 1d9z 1-411.pdb (file) | |
785 KB | REMARK Multi-model file containing a superposition of two crystal structures REMARK MODEL 1 is 1D9Z, MODEL 2 is 1A1V (NS3 Helicase with ssDNA bound) REMARK 1A1V was superimposed on residues 1-411 or 1D9Z using Pymol's align command REMARK Kars | 1 |
| 19:11, 27 March 2025 | Off by one.png (file) |  |
113 KB | troubleshooting 2025 Proteopedia | 1 |
| 18:35, 11 February 2025 | Turn 2mhr 67 70.pdb (file) | |
46 KB | with header | 2 |
| 17:07, 8 February 2025 | Beta turn type I.png (file) |  |
67 KB | Change orientation to be closer to mirror image of type I', Image:Beta_turn_type_I_prime.png. | 2 |
| 13:36, 8 February 2025 | Turn.pdb (file) | |
5 KB | long story | 1 |
| 19:26, 7 February 2025 | Beta turn type I prime.png (file) |  |
78 KB | Type I prime beta turn on the left, with Ramachandran plot on the right. Made from https://proteopedia.org/wiki/index.php/User:Karsten_Theis/turns | 1 |
| 22:02, 30 January 2025 | Super2ptn 2tgt.pdb (file) | |
315 KB | Superposition of 2ptn and 2tgt (bovine trypsin and trypsinogen). Details are in the header of the file. | 1 |
| 21:40, 25 January 2025 | Ligand 3ljj ProteinPlus.png (file) |  |
88 KB | Interactions between trypsin and a small-molecule trypsin inhibitor, PDB code 3ljj. Created with PoseEdit at https://proteins.plus/1y3v (ZBH U Hamburg). | 1 |
| 20:51, 25 January 2025 | Ligand 1y3v ProteinsPlus.png (file) |  |
100 KB | Interactions between trypsin and a small-molecule trypsin inhibitor, PDB code 1y3v. Created with PoseEdit at https://proteins.plus/1y3v (ZBH U Hamburg). | 1 |
| 19:12, 24 January 2025 | DNA grooves.png (file) |  |
218 KB | view of major and minor grooves, based on 10/100853/Grooves/2.spt. | 1 |
| 20:34, 20 December 2024 | GLP1 helix propensity.PNG (file) |  |
12 KB | 3 | |
| 20:13, 19 December 2024 | GLP1R.gif (file) |  |
162 KB | Morph of the extracellular domain (yellow) of the GLP-1 receptor between a conformation with GLP-1 (green) bound and without (structures 5vai and 6ln2). For simplicity, the trans-membrane domain (red) was not morphed. | 1 |
| 19:18, 19 December 2024 | GLP1R conformations.png (file) |  |
57 KB | Sketch of GLP-1 receptor conformations, inspired by https://www.nature.com/articles/s41467-020-14934-5 (Fig. 7). | 1 |
| 16:59, 19 December 2024 | Semaglutide Artwork.PNG (file) |  |
472 KB | Artists rendition of 4zgm, with semaglutide in blue, the extra-cellular domain of the GLP-1 receptor in orange, and a PEC molecule use in crystallization in black ball-and-stick. | 1 |
| 21:50, 18 December 2024 | GLP1 DPP4 processing.png (file) |  |
144 KB | Sequence of GLP-1 (7-37) and site of hydrolysis by DPP-4 | 1 |
| 21:43, 18 December 2024 | GLP-1 semaglutide.png (file) |  |
104 KB | Modified version of https://commons.wikimedia.org/wiki/File:Tirzepatide%2BSemaglutide_vs._GLP-1_GIP.svg | 1 |
| 18:42, 11 December 2024 | Semaglutide side effects.png (file) |  |
242 KB | Committee for Medicinal Products for Human use (CHMP). European Medicines Agency (EMA). (2018). https://www.ema.europa.eu/en/documents/assessment-report/ozempic-epar-public-assessment-report_en.pdf | 1 |
| 16:00, 7 December 2024 | AF-P01274-F1-model v4.cif (file) | |
176 KB | Pro-glucagon predicted structure, AlphaFold DB: AF-P01274-F1 Released in AlphaFold DB: 2021-12-09 Last Modified in AlphaFold DB: 2022-09-30 Organism(s): Sus scrofa | 1 |
| 19:44, 2 September 2024 | Lactase reaction.PNG (file) |  |
109 KB | Lactose is hydrolized to glucose and galactose | 1 |
| 14:41, 31 August 2024 | Tertiary interactions2.png (file) |  |
148 KB | 2 | |
| 14:09, 31 August 2024 | Tertiary interactions.png (file) |  |
483 KB | 2 | |
| 14:36, 25 August 2024 | Secondary structure OpenStax.jpg (file) |  |
277 KB | Schematic of alpha helix and beta sheet, from OpenStax Biology 2e, ISBN-13: 978-1-947172-52-4. | 1 |
| 13:59, 25 August 2024 | Peptide bond.jpg (file) |  |
73 KB | Net reaction of peptide bond formation, from OpenStax Biology 2e, ISBN-13: 978-1-947172-52-4. | 1 |
| 12:11, 19 June 2024 | Tamiflu sample.spt (file) | |
1 KB | 2 | |
| 15:12, 19 September 2023 | Porin tunnels sliced.gif (file) |  |
738 KB | See https://proteopedia.org/wiki/index.php/Image:Porin_2j1n_channels.gif | 1 |
| 15:09, 19 September 2023 | Porin 2j1n channels.gif (file) |  |
738 KB | 2 | |
| 14:53, 19 September 2023 | Porin wobble.gif (file) |  |
790 KB | 2 | |
| 14:07, 19 September 2023 | 2j1n OPM.pdb (file) | |
1.06 MB | Orientation of porin in the membrane predicted by https://opm.phar.umich.edu/proteins/688 | 1 |
| 13:32, 19 September 2023 | Tunnels.jvxl (file) | |
182 KB | Surface rendition of the channels in porin, 2j1n. Channels were rendered in Jmol using the "isosurface cavity" command, and then trimmed by distance to PACUPP pseudoatoms and by planes parallel to the membrane above and below the constriction in the chann | 1 |
| 20:30, 15 September 2023 | 1IH5 cavities xfine small 2 5 20 24.pdb (file) | |
253 KB | Aquaporin 1 structure 1IH5 with pseudoatoms in its channel generated by PACUPP. | 1 |
| 17:49, 15 September 2023 | 2j1n cavities fine small 3 5 20 24.pdb (file) | |
857 KB | Porin structure 2j1n with pseudo-atoms filling the cavities, generated by PACUPP. | 1 |
| 15:30, 4 July 2023 | Fibril chains.pdb (file) | |
238 KB | REMARK uploaded by Karsten Theis, 7/4/2023, after selecting 18 chains and adding chain IDs for easier visualization REMARK fibril 234432 arrangement according to https://www.frontiersin.org/articles/10.3389/fpls.2020.00479/full REMARK Cellulose builder | 1 |
| 17:22, 3 July 2023 | Catalase steps.PNG (file) |  |
15 KB | 2 | |
| 17:01, 3 July 2023 | Catalase net reaction.png (file) |  |
18 KB | Reaction scheme drawn with MarvinJS | 1 |
| 16:46, 3 July 2023 | Catalases MotM57.png (file) |  |
692 KB | David Goodsell's (RCSB PDB) rendition of three types of catalases, converted from TIFF to png for compression. View the original caption and context of this Molecule of the Month illustration at https://doi.org/10.2210/rcsb_pdb/mom_2004_9. | 1 |
| 00:26, 30 June 2023 | PEPC reaction mechanism.png (file) |  |
48 KB | From https://commons.wikimedia.org/wiki/File:PEP_Carboxylase_Mechanism.png, Tims2015, CC BY-SA 3.0 <https://creativecommons.org/licenses/by-sa/3.0>, via Wikimedia Commons | 3 |
| 12:27, 29 June 2023 | C4 PEPC reaction and regulation.png (file) |  |
67 KB | Reaction scheme drawn with MarvinJS using the following starting point: "OP([O-])(=O)OC(=C)C([O-])=O.OC([O-])=O>>[O-]C(=O)CC(=O)C([O-])=O.OP(O)([O-])=O" Saved as 2000x400 pixels and annotated using Powerpoint. | 3 |
