4q4u: Difference between revisions

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==TvNiR in complex with sulfite, low dose data set==
==TvNiR in complex with sulfite, low dose data set==
<StructureSection load='4q4u' size='340' side='right' caption='[[4q4u]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
<StructureSection load='4q4u' size='340' side='right'caption='[[4q4u]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4q4u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q4U FirstGlance]. <br>
<table><tr><td colspan='2'>[[4q4u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q4U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q4U FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.62&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4q5b|4q5b]], [[4q5c|4q5c]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q4u OCA], [http://pdbe.org/4q4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4q4u RCSB], [http://www.ebi.ac.uk/pdbsum/4q4u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4q4u ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q4u OCA], [https://pdbe.org/4q4u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q4u RCSB], [https://www.ebi.ac.uk/pdbsum/4q4u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q4u ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Q5F2I3_9GAMM Q5F2I3_9GAMM]] Plays a role in nitrite reduction (By similarity).[SAAS:SAAS003321_004_001592]
[https://www.uniprot.org/uniprot/NIR_THIND NIR_THIND] Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process (PubMed:16500161, PubMed:22281743). Has very low activity toward hydroxylamine (PubMed:16500161). Has even lower activity toward sulfite (PubMed:16500161, PubMed:22281743). Sulfite reductase activity is maximal at neutral pH (PubMed:20944237).<ref>PMID:16500161</ref> <ref>PMID:20944237</ref> <ref>PMID:22281743</ref>


==See Also==
==See Also==
*[[TRNA-guanine transglycosylase|TRNA-guanine transglycosylase]]
*[[Cytochrome c nitrite reductase|Cytochrome c nitrite reductase]]
*[[TRNA-guanine transglycosylase 3D structures|TRNA-guanine transglycosylase 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Thioalkalivibrio nitratireducens]]
[[Category: Thioalkalivibrio nitratireducens]]
[[Category: Lazarenko, V A]]
[[Category: Lazarenko VA]]
[[Category: Polyakov, K M]]
[[Category: Polyakov KM]]
[[Category: Popov, A N]]
[[Category: Popov AN]]
[[Category: Popov, V O]]
[[Category: Popov VO]]
[[Category: Tikhonov, A V]]
[[Category: Tikhonov AV]]
[[Category: Tikhonova, T V]]
[[Category: Tikhonova TV]]
[[Category: Trofimov, A A]]
[[Category: Trofimov AA]]
[[Category: Hemes c]]
[[Category: Oxidoreductase]]

Latest revision as of 11:18, 6 November 2024

TvNiR in complex with sulfite, low dose data set

4q4u, resolution 1.62Å

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