Exonuclease 3D structures: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
Michal Harel (talk | contribs)
32,831 edits
No edit summary
Michal Harel (talk | contribs)
32,831 edits
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 8: Line 8:
**[[3qea]], [[3qeb]], [[5v04]], [[5v05]], [[5v06]], [[5v0b]], [[5v0c]], [[5v0d]], [[5v0e]], [[5uzv]] - hExN-I + DNA - human<br />
**[[3qea]], [[3qeb]], [[5v04]], [[5v05]], [[5v06]], [[5v0b]], [[5v0c]], [[5v0d]], [[5v0e]], [[5uzv]] - hExN-I + DNA - human<br />
**[[3qe9]], [[5v07]], [[5v08]], [[5v09]], [[5v0a]] – hExN-I (mutant) + DNA<br />
**[[3qe9]], [[5v07]], [[5v08]], [[5v09]], [[5v0a]] – hExN-I (mutant) + DNA<br />
**[[5fiq]], [[5fis]] – ExN-I ExN domain – silkworm<br />
**[[1fxx]], [[3c95]] – EcExN-I – ''Escherichia coli''<br />
**[[1fxx]], [[3c95]] – EcExN-I – ''Escherichia coli''<br />
**[[2qxf]] - EcExN-I + TMP<br />
**[[2qxf]] - EcExN-I + TMP<br />
Line 14: Line 15:
**[[4jrp]], [[4jrq]], [[4js5]], [[4js4]], [[4hcc]], [[4hcb]] – EcExN-I + DNA<br />
**[[4jrp]], [[4jrq]], [[4js5]], [[4js4]], [[4hcc]], [[4hcb]] – EcExN-I + DNA<br />
**[[4rg8]] – ExN-I (mutant) – ''Methylocaldum szegedienes''<br />
**[[4rg8]] – ExN-I (mutant) – ''Methylocaldum szegedienes''<br />
**[[5fiq]], [[5fis]] – ExN-I ExN domain – silkworm<br />


*ExN-III
*ExN-III
Line 32: Line 32:
*ExN-V or RecBCD
*ExN-V or RecBCD


**[[7lw7]] – hExN-V (mutant) <br />
**[[7lw8]], [[7lw9]], [[7lwa]] – hExN-V (mutant) + DNA – Cryo EM<br />
**[[3e1s]] - EcExN-V RecD subunit<br />
**[[3e1s]] - EcExN-V RecD subunit<br />
**[[1w36]], [[3k70]] – EcExN-V RecB+RecC+RecD subunits + DNA hairpin<br />
**[[7mr0]], [[7mr1]], [[7mr2]], [[7mr4]] – EcExN-V RecB+RecC+RecD subunits – Cryo EM<br />
**[[5ld2]] – EcExN-V RecB+RecC+RecD subunits + DNA – Cryo EM<br />
**[[1w36]], [[3k70]] – EcExN-V RecB+RecC+RecD subunits + DNA hairpin
**[[5ld2]], [[7mr3]] – EcExN-V RecB+RecC+RecD subunits + DNA – Cryo EM<br />
**[[5mbv]] – EcExN-V RecB+RecC+RecD subunits + GAMS – Cryo EM<br />
**[[5mbv]] – EcExN-V RecB+RecC+RecD subunits + GAMS – Cryo EM<br />
**[[8b1r]] – EcExN-V RecB+RecC+RecD subunits + RecBCD inhibitor gene product – Cryo EM<br />
**[[6sjb]], [[6sje]], [[6sjf]], [[6sjg]], [[6t2u]], [[6t2v]] – EcExN-V RecB (mutant)+RecC+RecD subunits + DNA – Cryo EM<br />
**[[6sjb]], [[6sje]], [[6sjf]], [[6sjg]], [[6t2u]], [[6t2v]] – EcExN-V RecB (mutant)+RecC+RecD subunits + DNA – Cryo EM<br />
**[[3gp8]] - DrExN-V RecD subunit + DNA – ''Deinococcus radiodurans''<br />
**[[3gp8]] - DrExN-V RecD subunit + DNA – ''Deinococcus radiodurans''<br />
Line 62: Line 66:
**[[3slp]], [[4wuz]] - BlExN λ + DNA<br />
**[[3slp]], [[4wuz]] - BlExN λ + DNA<br />
**[[3sm4]] - BlExN λ (mutant) + DNA<br />
**[[3sm4]] - BlExN λ (mutant) + DNA<br />
**[[6lpm]] - Dr5’-ExN III<br />
**[[3k93]] – ExN – Haemophilus somnus
**[[3k93]] – ExN – Haemophilus somnus


Line 70: Line 75:
**[[5ght]] – TkExN – ''Thermococcus kodakarensis''<br />
**[[5ght]] – TkExN – ''Thermococcus kodakarensis''<br />
**[[5ghs]], [[5ghr]] – TkExN + polypeptide<br />
**[[5ghs]], [[5ghr]] – TkExN + polypeptide<br />
**[[7e15]] – TkExN + GINS51 + DNA polymerase II small subunit<br />
**[[5f54]] – DrExN + dTMP<br />
**[[5f54]] – DrExN + dTMP<br />
**[[5f55]] – DrExN + DNA<br />
**[[5f55]] – DrExN + DNA<br />
Line 77: Line 83:


**[[4qoz]], [[4l8r]] – hExN + histone RNA hairpin-binding protein + RNA<br />
**[[4qoz]], [[4l8r]] – hExN + histone RNA hairpin-binding protein + RNA<br />
**[[8zef]] – hExN DING + DNA<br />
**[[8q1k]], [[8q1x]], [[8s86]] – hExN PLD3<br />
**[[8v08]] – hExN PLD4 + ssDNA<br />
**[[8v05]], [[8v07]], [[8v5t]] – mExN PLD3<br />
**[[8v06]] – mExN PLD3 + ssDNA<br />
**[[4yor]], [[4yot]], [[4you]] – PhExN phoexo I – ''Pyrococcus horikoshii''<br />
**[[4yor]], [[4yot]], [[4you]] – PhExN phoexo I – ''Pyrococcus horikoshii''<br />
**[[4yov]], [[4yow]], [[4yox]], [[4yoy]] – PhExN phoexo I (mutant) + DNA<br />
**[[4yov]], [[4yow]], [[4yox]], [[4yoy]] – PhExN phoexo I (mutant) + DNA<br />
**[[7t2s]] – EcExN <br />
**[[9f7l]] – ExN + pGG – ''Bartonella henselae''<br />
*3’-5’ ExN oligoribonuclease (ORN)
**[[3tr8]] – ORN – ''Coxiella burnetii''<br />
**[[5cy4]] – ORN – ''Acinetobacter baumannii''<br />
**[[6a4a]] – CpORN – ''Colwella psychrerythraea''<br />
**[[6a4d]] – CpORN (mutant) + PNP-TMP <br />
**[[6a4e]] – CpORN (mutant) + RNA<br />
**[[6a4f]] – CpORN + UMP <br />
**[[2gbz]] – ORN – ''Xanthomonas campestris''<br />
**[[1yta]], [[2igi]] – EcORN <br />
**[[1j9a]] – ORN – ''Haemophilus influenzae''<br />
**[[6n6a]], [[6n6c]], [[6n6d]], [[6n6e]] [[6n6f]], [[6n6g]], [[6n6h]] – ORN + RNA – ''Vibrio cholerae''<br />


*5’-3’ ExN
*5’-3’ ExN
Line 85: Line 111:
**[[6c34]], [[6c35]], [[6c36]] – MsExN (mutant)<br />
**[[6c34]], [[6c35]], [[6c36]] – MsExN (mutant)<br />


*ExN Trex
*ExN Trex or three-prime repair exonuclease 1


**[[7tqn]], [[7tqo]], [[7tqp]] - hExN Trex1 (mutant)<br />
**[[7tqq]] - hExN Trex1 + DNA<br />
**[[8vl7]], [[9ava]], [[9o0w]], [[9o0x]], [[9o0y]] - hExN Trex1 + inhibitor<br />
**[[1y97]] – hExN Trex2<br />
**[[1y97]] – hExN Trex2<br />
**[[2o4g]] - mExN Trex1 + nucleotide – mouse<br />
**[[2o4g]] - mExN Trex1 + nucleotide – mouse<br />
**[[3mxj]] - mExN Trex1<br />
**[[2ioc]], [[3mxj]] - mExN Trex1<br />
**[[6w10]] - mExN Trex1 (mutant)<br />
**[[2o4i]], [[3mxi]], [[3mxm]], [[3u3y]], [[3u6f]] - mExN Trex1 (mutant) + polynucleotide<br />
**[[2o4i]], [[3mxi]], [[3mxm]], [[3u3y]], [[3u6f]] - mExN Trex1 (mutant) + polynucleotide<br />
**[[2oa8]], [[5ywv]], [[5ywu]], [[5ywt]], [[5yws]] - mExN Trex1 + DNA<br />
**[[2oa8]], [[5ywv]], [[5ywu]], [[5ywt]], [[5yws]] - mExN Trex1 + DNA<br />
**[[8hcc]], [[8hcd]], [[8hce]], [[8hcf]] - mExN Trex1 + nucleotide
**[[4ynq]] - mExN Trex1 (mutant) + DNA<br />
**[[4ynq]] - mExN Trex1 (mutant) + DNA<br />
**[[3b6o]], [[3b6p]] - mExN Trex1 + ion inhibitor
**[[7u8y]] - mExN Trex1 + inhibitor<br />
**[[8hch]] - mExN Trex1 + uridine<br />
**[[3b6o]], [[3b6p]] - mExN Trex1 + ion inhibitor<br />
**[[3b6o]], [[3b6p]] - mExN Trex1 + ion inhibitor<br />
**[[6a45]] - mExN Trex2<br />
**[[6a45]] - mExN Trex2<br />
**[[6a4b]], [[6a47]] - mExN Trex2 + DNA<br />
**[[6a4b]], [[6a47]] - mExN Trex2 + DNA<br />
**[[6a46]] - mExN Trex2 + nucleotide<br />
**[[6a46]] - mExN Trex2 + nucleotide<br />
*RNA ExN homolog or oligoribonuclease or REXO2
**[[6rci]] – hExN2<br />
**[[6j7y]] – hExN2 + DNA<br />
**[[6j80]], [[6rcn]] – hExN2 (mutant) + DNA<br />
**[[6n6i]], [[6n6j]], [[6n6k]], [[6rcl]], [[6sty]] – hExN2 + RNA<br />
**[[6j7z]] – hExN2 (mutant) + RNA<br />


*Other ExN
*Other ExN
Line 103: Line 145:
**[[1zbu]] - hExn Eri1<br />
**[[1zbu]] - hExn Eri1<br />
**[[1zbh]] - hExn Eri1 (mutant) + DNA<br />
**[[1zbh]] - hExn Eri1 (mutant) + DNA<br />
**[[5aho]] – hExN Apollo<br />
**[[5aho]], [[7b9b]] – hExN Apollo<br />
**[[7b2x]] – hExN Apollo (mutant)<br />
**[[7a1f]] – hExN Apollo + AMP<br />
**[[5zyw]] – hExN mitochondrial genome repair 1<br />
**[[5zyw]] – hExN mitochondrial genome repair 1<br />
**[[5zyv]], [[5zyu]], [[5zyt]] – hExN mitochondrial genome repair 1 + DNA<br />
**[[5zyv]], [[5zyu]], [[5zyt]] – hExN mitochondrial genome repair 1 + DNA<br />
**[[8q66]] – ExN Mut-7 + SH2 domain-containing protein – ''Caenorhabditis elegans''<br />
**[[3e2v]] – yExN <br />
**[[3e2v]] – yExN <br />
**[[2w45]] – H4ExN alkaline - Herpesvirus 4<br />
**[[2w45]] – H4ExN alkaline - Herpesvirus 4<br />
Line 115: Line 160:
**[[6m9k]] - ExN + recombination protein BET – Escherichia phage λ<br />
**[[6m9k]] - ExN + recombination protein BET – Escherichia phage λ<br />
**[[1ir6]], [[2zxo]], [[2zxp]], [[2zxr]] – ExN Recj – ''Thermus thermophiles''<br />
**[[1ir6]], [[2zxo]], [[2zxp]], [[2zxr]] – ExN Recj – ''Thermus thermophiles''<br />
**[[8y30]] - ExN Recj – ''Staphylococcus aureus''
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Latest revision as of 08:33, 4 June 2025

3D Structures of exonuclease

Updated on 04-June-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Retrieved from "https://proteopedia.org/index.php?title=Exonuclease_3D_structures&oldid=4343229"