ATPase 3D structures: Difference between revisions

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**[[2jmx]] - bF1-ATPS+subunit O - bovine<br />
**[[2jmx]] - bF1-ATPS+subunit O - bovine<br />
**[[2r9v]] - TmF1-ATPS – ''Thermotoga maritima''<br />
**[[6foc]] – MsF-ATPase – ''Mycobacterium smegmatis''<br />
**[[6foc]] – MsF-ATPase – ''Mycobacterium smegmatis''<br />
*''F1F0 ATPase β subunit''
**[[1pyv]] - F1-ATPS – NMR – tobacco<br />
**[[1b9u]] – EcF1-ATPS membrane domain – ''Escherichia coli'' -NMR<BR />
**[[4utq]] – EcF1-ATPS membrane domain + insertase YIDC – Cryo EM<BR />
**[[1l2p]] – EcF1-ATPS dimerization domain<br />
**[[2khk]] - EcF1-ATPS fragment – NMR<BR />
**[[4q4l]] - F1-ATPS – Burkholderia thailandensis<br />


*''F1F0 ATPase γ subunit''
*''F1F0 ATPase γ subunit''


**[[4mjn]] - F1-ATPS - wheat<br />
**[[1yce]] – F0-ATPS – ''Ilyobacter tartaricus''<br />
**[[1wu0]] – BsATPS – NMR<BR />
**[[1a91]], [[1c0v]], [[1aty]], [[1c99]] - EcF1-ATPS – NMR<BR />
**[[2wgm]], [[1yce]] – F0-ATPS – ''Ilyobacter tartaricus''<br />
**[[2x2v]], [[4cbk]], [[4cbj]] – F0-ATPS – ''Bacillus pseudofirmus''<br />
**[[4bem]] - F1F0-ATPS – ''Acetobacterium woodii''<br />
 
*''F1F0 ATPase δ subunit''
 
**[[1abv]] – EcF1-ATPS N terminal – NMR<BR />


*''F1F0 ATPase ε subunit''
*''F1F0 ATPase ε subunit''


**[[2rq6]], [[2rq7]] - TeF1-ATPS – ''Thermosynechococcus elongatus''<br />
**[[2rq6]], [[2rq7]] - TeF1-ATPS – ''Thermosynechococcus elongatus''<br />
**[[1abv]], [[1aqt]] – EcF1-ATPS (mutant)<br />
**[[1abv]] – EcF1-ATPS (mutant)<br />
**[[1bsh]], [[1bsn]] – EcF1-ATPS – NMR<BR />
 
**[[2e5t]], [[2e5u]] – BsF1-ATPS C terminal – NMR<BR />
**[[2e5y]] – BsF1-ATPS<br />
**[[6pi4]] – MsF1-ATPS <BR />
**[[5yio]] – MtF1-ATPS+GDP – ''Mycobacterium tuberculosis'' - NMR<br />


*''F1F0 ATPase C subunit''
*''F1F0 ATPase C subunit''
Line 51: Line 28:
*''F1F0 ATPase α, β subunits''
*''F1F0 ATPase α, β subunits''


**[[1sky]] – BaF1-ATPS – Bacillus sp. Ps3<br />
**[[1sky]] – BaF1-ATPS – Bacillus <br />
**[[5cdf]] – PdATPase - ''Paracoccus denitrificans''<br />
**[[5cdf]] – PdATPase - ''Paracoccus denitrificans''<br />


*”F1F0 ATPase α,γ subunits”
**[[1c17]] – EcF1-ATPS – NMR<br />


*''F1F0 ATPase α, δ subunits''
*''F1F0 ATPase α, δ subunits''
Line 62: Line 36:
**[[2a7u]] – EcF1-ATPS N termini – NMR<BR />
**[[2a7u]] – EcF1-ATPS N termini – NMR<BR />


*''F1F0 ATPase β, δ subunits''
**[[2cly]] – bF1-ATPS + ATPS coupling factor - bovine<br />


*''F1F0 ATPase γ, ε subunits''
*''F1F0 ATPase γ, ε subunits''


**[[1fs0]] – EcF1-ATPS<br />
**[[5zwl]] – TeF1-ATPS<br />
**[[5zwl]] – TeF1-ATPS<br />
**[[6tdx]] – F1-ATPS – Euglena gracilis – Cryo EM<br />


*''F1F0 ATPase α, β, γ subunits''
*''F1F0 ATPase α, β, γ subunits''
Line 81: Line 50:
**[[1mab]], [[2f43]] - raF1-ATPS – rat<br />
**[[1mab]], [[2f43]] - raF1-ATPS – rat<br />
**[[6vwk]] - EcF1-ATPS <br />
**[[6vwk]] - EcF1-ATPS <br />
**[[6n2d]] – BaF1-ATPS – Cryo EM<br />
*''F1F0 ATPase α,β,γ,δ subunits''


**[[1qo1]] - yF1-ATPS + protein 9 - yeast<br />
**[[7jgb]], [[7jgc]] – MsF0-ATPS – Cryo EM<br />


*''F1F0 ATPase α,β,γ,ε subunits''
*”F1F0 ATPase α,β,γ,ε subunits”


**[[1jnv]] - EcF1-ATPS <br />
**[[1jnv]] - EcF1-ATPS <br />
**[[3oaa]] – EcF1-ATPS (mutant) <br />
**[[2qe7]], [[4xd7]] – BaF1-ATPS <br />
**[[2qe7]], [[4xd7]] – BaF1-ATPS <br />
**[[5ik2]], [[5hkk]] – F1-ATPS – Cakdalkalibacillus thermarum<br />
**[[5ik2]], [[5hkk]] – F1-ATPS – Cakdalkalibacillus thermarum<br />
Line 102: Line 65:
**[[2v7q]], [[1e79]], [[2ck3]] -  bF1-ATPS+inhibitor<br />
**[[2v7q]], [[1e79]], [[2ck3]] -  bF1-ATPS+inhibitor<br />
**[[4yxw]] -  bF1-ATPS+ ANP<br />
**[[4yxw]] -  bF1-ATPS+ ANP<br />
**[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
**[[2xnd]] - bF1-ATPS+ATPS lipid-binding protein<br />
**[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP<br />
**[[3oe7]], [[3oee]], [[3oeh]], [[3ofn]] - yF1-ATPS (mutant)<br />
**[[3oe7]], [[3oee]], [[3oeh]], [[3ofn]] - yF1-ATPS (mutant)<br />
**[[3fks]], [[3zry]], [[2hld]] - yF1-ATPS<br />
**[[3fks]] - yF1-ATPS<br />
**[[3zia]] - yF1-ATPS + inhibitor protein<br />
**[[3zia]] - yF1-ATPS + inhibitor protein<br />
**[[6f5d]] - F1-ATPS + ribonucleoprotein P18 – Trypanosoma brucei<br />
**[[6f5d]] - F1-ATPS + ribonucleoprotein P18 – Trypanosoma brucei<br />
**[[3j0j]] – TtATPS α,β,γ,δ,ε,ζ - Cryo EM<br />
**[[3j0j]] – TtATPS α,β,γ,δ,ε,ζ - Cryo EM<br />


*''F1F0 ATPase multiple subunits''
*''F1F0 ATPase multiple subunits''


**[[5fil]], [[5fik]], [[5fij]], [[5ari]], [[5arh]], [[5are]], [[5ara]], [[6zbb]] – bATPase - Cryo EM<br />
**[[1bmf]] - bF1-ATPS<br />
**[[1bmf]] - bF1-ATPS<br />
**[[3dze]] – bF1-ATPS subunit S<br />
**[[3dze]] – bF1-ATPS subunit S<br />
**[[1cow]] - bF1-ATPS+aurovertin B<br />
**[[1cow]] - bF1-ATPS+aurovertin B<br />
**[[6yy0]] - bF1-ATPS+ inhibitor + coupling factor – Cryo EM<br />
**[[6za9]] – ATPase – sheep - Cryo EM<br />
**[[6j54]], [[6j5a]], [[6j5i]], [[6j5j]], [[6zmr]] – pATPase – pig - Cryo EM<br />
 
**[[6j5k]] – pATPase + IF1 - Cryo EM<br />
**[[6tt7]], [[6za9]] – ATPase – sheep - Cryo EM<br />
**[[4b2q]], [[6b8h]], [[6b2z]], [[6cp6]], [[6cp7]], [[6wtd]] – yATPase – Cryo EM – yeast<br />
**[[6cp3]] – yATPase + oligomycin<br />
**[[6cp5]] – yATPase + oligomycin – Cryo EM<br />
**[[4f4s]] – yATPase subunit 9 + oligomycin <br />
**[[4f4s]] – yATPase subunit 9 + oligomycin <br />
**[[5dn6]] – PdATPase + zeta inhibitor protein <br />
 
**[[5t4q]], [[5t4p]], [[5t4o]], [[6oqr]], [[6oqs]], [[6oqt]], [[6oqu]], [[6oqv]], [[6pqv]], [[6wnq]], [[6wnr]] – EcATPase – Cryo EM<br />
 
**[[6vm1]] – sATPase – Cryo EM<br />
**[[6fkf]], [[6fkh]], [[6fgki]], [[6vmb]], [[6vmd]], [[6vof]], [[6vog]], [[6voh]], [[6voi]], [[6voj]], [[6vok]], [[6vol]], [[6vom]], [[6von]], [[6voo]] – sATPase + ADP + ATP – Cryo EM<br />
**[[5lqz]], [[5lqy]], [[5lqx]] – ATPase + ATPase inhibitor protein – Ogataea angusta - Cryo EM<br />
**[[6tmh]], [[6tmj]], [[6tmk]] – ATPase + ATPase inhibitor protein + OSCP – Toxoplasma gondii - Cryo EM<br />
**[[6ynz]], [[6yo0]] – ATPase – Tetrashymena thermophila - Cryo EM<br />
**[[6rd6]], [[6rd9]], [[6rda]], [[6rdb]], [[6rdc]], [[6rdd]], [[6rde]], [[6rdf]], [[6rdg]], [[6rdi]], [[6rdj]], [[6rdk]], [[6rdl]], [[6rdm]], [[6rdn]], [[6rdp]], [[6rdq]], [[6rds]], [[6rdt]], [[6rdu]], [[6rdv]], [[6rdx]], [[6rdy]], [[6rdz]], [[6re0]], [[6re1]], [[6re2]], [[6re3]], [[6re4]], [[6re5]], [[6re6]], [[6re7]], [[6re8]], [[6re9]], [[6rea]], [[6reb]], [[6rec]], [[6red]], [[6ree]], [[6ref]], [[6rer]], [[6res]], [[6reu]] – ATPase – Polytomella - Cryo EM<br />
*V-ATPase
*V-ATPase


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**[[5i1m]] – yATPase  <br />
**[[5i1m]] – yATPase  <br />
**[[6hh0]] – yATPase  helix 7 - NMR<br />
**[[6hh0]] – yATPase  helix 7 - NMR<br />
**[[3i4l]] - PhATPS subunit A+AMPPNP<br />
 
**[[3mfy]], [[3m4y]], [[3nd8]], [[3nd9]], [[3p20]], [[3qg1]], [[3qia]], [[3qjy]], [[3sdz]], [[3se0]], [[5x09]] - PhATPS subunit A
(mutant)<br />
**[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br />
**[[4o1s]] - ATPS subunit A – Thermoplasma volcanium<br />
**[[4o1s]] - ATPS subunit A – Thermoplasma volcanium<br />
**[[5bn5]] – NeATPase + NEQ263 – Nanoarchaeum equitans  <br />
**[[5bn4]] – NeATPase + NEQ263 + ANP  <br />
**[[5bn3]] – NeATPase + NEQ263 + ADP  <br />


*''V-ATPase subunit B''
*''V-ATPase subunit B''


**[[2c61]] - MmATPS subunit B – ''Methanosarcina mazei''<br />
**[[2c61]] - MmATPS subunit B – ''Methanosarcina mazei''<br />
**[[2rkw]], [[3b2q]], [[3ssa]], [[3tgw]], [[3tiv]] - MmATPS subunit B (mutant)<br />
**[[3dsr]] - MmATPS subunit B+ADP<br />
**[[3eiu]] - MmATPS subunit B+ATP<br />


*''V-ATPase subunit C''
*''V-ATPase subunit C''


**[[3v3c]] - ATPS subunit C - pea<br />
**[[2w5j]] - sATPS subunit C <br />
**[[2w5j]] - sATPS subunit C <br />
**[[1u7l]], [[3u2f]], [[3u2y]], [[3u32]], [[3ud0]] - yATPS subunit C<br />
**[[1u7l]], - yATPS subunit C<br />
**[[1ijp]], [[1l6t]] – EcF1-ATPS subunit C (mutant) - NMR<br />
**[[1ijp]], [[1l6t]] – EcF1-ATPS subunit C (mutant) - NMR<br />
**[[1r5z]], [[1v9m]] - TtATPS subunit C – ''Thermus thermophilus''<br />
**[[1r5z]], [[1v9m]] - TtATPS subunit C – ''Thermus thermophilus''<br />
**[[3lg8]] - MtATPS subunit C C-terminal<br />
**[[2wie]], [[2xqs]], [[2xqt]], [[2xqu]] - ATPS subunit C – Arthrospira platensis<br />
**[[3zk1]], [[3zk2]] - FcATPS subunit C <br />


*''V-ATPase subunit D+F''
*''V-ATPase subunit D+F''
Line 172: Line 110:


**[[2kz9]] – yATPase subunit E<br />
**[[2kz9]] – yATPase subunit E<br />
**[[2dm9]], [[2dma]], [[4dt0]] - PhATPS subunit E – ''Pyrococcus horikoshii''<br />
**[[2kk7]] - MjATPS subunit E – ''Methanocaldococcus jannaschii''<br />
**[[3v6i]] – TtATPS subunit E + VAPC<br />
**[[3v6i]] – TtATPS subunit E + VAPC<br />


Line 179: Line 115:


**[[4ix9]] – yATP subunit F (mutant)<br />
**[[4ix9]] – yATP subunit F (mutant)<br />
**[[2qai]] - ATPS subunit F – ''Pyrococcus furiosus''<br />
**[[2i4r]] - ATPS subunit F – ''Archaeoglobus fulgidus''<br />
**[[2ov6]] - MmATPS subunit F - NMR<br />
**[[2d00]] - TtATPS subunit F <br />


*''V-ATPase subunit G''
*''V-ATPase subunit G''
Line 205: Line 137:
**[[6wlw]] – hATPase – Cryo EM <br />
**[[6wlw]] – hATPase – Cryo EM <br />
**[[6wlz]], [[6wm2]], [[6wm3]], [[6wm4]] – hATPase + ADP – Cryo EM <br />
**[[6wlz]], [[6wm2]], [[6wm3]], [[6wm4]] – hATPase + ADP – Cryo EM <br />
**[[6xbw]], [[6xby]], [[6zg7]], [[6zg8]], [[6zik]], [[6ziq]], [[6zit]], [[6ziu]], [[6zpo]], [[6zqm]], [[6zqn]] – bATPase – Cryo EM <br />
**[[7u4t]], [[7unf]] – hATPase + MTOR – Cryo EM <br />
**[[6xbw]], [[6xby]], – bATPase – Cryo EM <br />
**[[7khr]] – bATPase + antibiotics – Cryo EM <br />
**[[7khr]] – bATPase + antibiotics – Cryo EM <br />
**[[7une]] – bATPase + MTOR – Cryo EM <br />
**[[7u8o]], [[7u8p]], [[7u8q]], [[7u8r]] – pATPase – Cryo EM <br />
**[[6vq6]], [[6vq7]], [[6vq8]] - raATPS subunit A,B,C,D,E,E2, F,G,K, S1 + effector + renin receptor – Cryo EM<br />
**[[6vq6]], [[6vq7]], [[6vq8]] - raATPS subunit A,B,C,D,E,E2, F,G,K, S1 + effector + renin receptor – Cryo EM<br />
**[[6vq9]], [[6vqa]], [[6vqb]] - raATPS subunit A,B,D,E,E2,G,H + effector – Cryo EM<br />
**[[6vq9]], [[6vqa]], [[6vqb]] - raATPS subunit A,B,D,E,E2,G,H + effector – Cryo EM<br />
**[[6vqc]], [[6vqg]], [[6vqh]] - raATPS subunit A,B,D,E2, F, S1 + renin receptor + RNase K – Cryo EM<br />
**[[6vqc]], [[6vqg]], [[6vqh]] - raATPS subunit A,B,D,E2, F, S1 + renin receptor + RNase K – Cryo EM<br />
**[[6vqi]], [[6vqj]], [[6vqk]] - raATPS subunit A,C1,E1,G – Cryo EM<br />
**[[6vqi]], [[6vqj]], [[6vqk]] - raATPS subunit A,C1,E1,G – Cryo EM<br />
**[[7uw9]], [[7uwa]], [[7uwb]], [[7uwc]], [[7uwd]] – ATPase - lemon – Cryo EM<br />
**[[7fda]], [[7fdb]], [[7fdc]], [[7fde]], [[7tmm]], [[7tmo]], [[7tmp]], [[7tmq]], [[7tmr]], [[7tms]], [[7tmt]] – yATPase – Cryo EM<br />
**[[7tao]], [[7tap]] – yATPase + antibiotics – Cryo EM<br />
**[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
**[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
**[[3w3a]] - yATPS subunit A,B,D,F<br />
**[[3w3a]] - yATPS subunit A,B,D,F<br />
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**[[6ly9]] - TtATPS subunit C,E,I,K - Cryo-EM<br />
**[[6ly9]] - TtATPS subunit C,E,I,K - Cryo-EM<br />
**[[5tsj]] - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM<br />
**[[5tsj]] - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM<br />
**[[5gas]], [[5gar]] - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM<br />
**[[5gas]], [[5gar]], [[7vai]], [[7vaj]], [[7vak]], [[7val]], [[7vam]], [[7van]], [[7vao]], [[7vap]], [[7vaq]], [[7var]], [[7vas]], [[7vat]], [[7vau]], [[7vav]], [[7vaw]], [[7vax]], [[7vay]], [[7vb0]] - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM<br />
**[[5y60]]. [[5y5z]], [[5y5y]], [[5y5x]], [[6qum]], [[6r0w]], [[6r0y]], [[6r0z]], [[6r10]] - TtATPS subunit A,B,C,D,E,F,I,K - Cryo-EM<br />
**[[5y60]]. [[5y5z]], [[5y5y]], [[5y5x]], [[6qum]], [[6r0w]], [[6r0y]], [[6r0z]], [[6r10]] - TtATPS subunit A,B,C,D,E,F,I,K - Cryo-EM<br />
**[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />  
**[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />  
**[[3k5b]] - TtATPS subunit E (mutant)+C<br />
**[[3k5b]] - TtATPS subunit E (mutant)+C<br />
**[[5zea]] - EhATPS subunit A,B (mutant)<br />
**[[5zea]], [[7dqe]] - EhATPS subunit A,B (mutant)<br />
**[[5ze9]] - EhATPS subunit A,B (mutant) + AMPPNP<br />
**[[5ze9]] - EhATPS subunit A,B (mutant) + AMPPNP<br />
**[[5knd]], [[5knc]], [[5knb]] - EhATPS subunit A,B,D,F<br />
**[[5knd]], [[5knc]], [[5knb]] - EhATPS subunit A,B,D,F<br />


*'''P-ATPase'''
P-ATPase


*''Cu+2 transporting ATPase''
*''Cu+2 transporting ATPase''
Line 267: Line 205:
**[[2yj3]] - SsATPase catalytic domain (mutant)<br />
**[[2yj3]] - SsATPase catalytic domain (mutant)<br />
**[[2yj4]], [[2yj5]], [[2yj6]] - SsATPase catalytic domain (mutant) + nucleotide<br />
**[[2yj4]], [[2yj5]], [[2yj6]] - SsATPase catalytic domain (mutant) + nucleotide<br />
**[[3rfu]], [[4bbj]], [[4bev]], [[4byg]] – LpATPase – ''Legionella pneumophila''<br />
**[[3rfu]], [[4bbj]], [[4bev]], [[4byg]] – LpATPase – ''Legionella pneumophila''<br />
**[[4f2f]] - ATPase metal-binding domain – ''Streptococcus pneumonia''<br />
**[[4f2f]] - ATPase metal-binding domain – ''Streptococcus pneumonia''<br />


*''Na/K transporting ATPase''
*''Na/K transporting ATPase''


**[[7e1z]], [[7e20]], [[7e21]] - hATPase – Cryo EM<br />
**[[8d3u]], [[8d3v]], [[8d3w]], [[8d3x]], [[8d3y]] - hATPase + ion transport regulator – Cryo EM<br />
**[[3kdp]], [[3b8e]] – pATPase  <br />
**[[3kdp]], [[3b8e]] – pATPase  <br />
**[[3n23]] – pATPase + ouabain<br />
**[[3n23]] – pATPase + ouabain<br />
Line 278: Line 218:
**[[1q3i]] - pATPase NBD<br />
**[[1q3i]] - pATPase NBD<br />
**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
**[[7d91]], [[7ddf]], [[7wyt]] - pATPase subunits A,B + ion transport regulator <br />
**[[7d91]], [[7ddf]], [[7ddj]] - pATPase subunits A,B + ion transport regulator <br />
**[[7d92]], [[7d93]], [[7d94]], [[7wys]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />
**[[7d92]], [[7d93]], [[7d94]], [[7ddg]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />
**[[4xe5]] - bATPase <br />
**[[4xe5]] - bATPase <br />
**[[1mo8]], [[1mo7]] - rATPase α-1 <br />
**[[1mo8]], [[1mo7]] - rATPase α-1 <br />
**[[2zxe]] - ATPase subunits α,β + phospholemman-like protein – spiny dogfish
**[[2hc8]] –AfATPase CopA A domain<br />
**[[2hc8]] –AfATPase CopA A domain<br />
**[[2b8e]] - AfATPase CopA NBD<br />
**[[2b8e]] - AfATPase CopA NBD<br />
**[[3a3y]] - SaATPase+K+ouabain – ''Squalus acanthias''<br />
**[[3a3y]] - sdATPase+K+ouabain – spiny dogfish<br />
**[[2xze]] - SaATPase<br />
**[[2xze]] - sdATPase<br />
**[[5aw9]], [[5aw8]], [[5aw7]], [[5aw6]], [[5aw5]], [[5aw4]], [[5aw3]], [[5aw2]], [[5aw1]], [[5aw0]], [[5avz]], [[5avy]], [[5avx]], [[5avw]], [[5avv]], [[5avu]], [[5avt]], [[5avs]], [[5avr]], [[5avq]] – SaATPase + phospholemman-like protein<br />
**[[2zxe]], [[5aw9]], [[5aw8]], [[5aw7]], [[5aw6]], [[5aw5]], [[5aw4]], [[5aw3]], [[5aw2]], [[5aw1]], [[5aw0]], [[5avz]], [[5avy]], [[5avx]], [[5avw]], [[5avv]], [[5avu]], [[5avt]], [[5avs]], [[5avr]], [[5avq]] – sdATPase + phospholemman-like protein<br />
**[[7wys]], [[7wyt]], [[7wyu]], [[7wuv]], [[7wyw]], [[7wyx]], [[7wyy]], [[7wyz]], [[7wz0]], [[7y45]], [[7y46]]- sdATPase + ion transport regulator – Cryo EM<br />


*''Ca+2 transporting ATPase''
*''Ca+2 transporting ATPase''
Line 327: Line 267:
**[[4ycn]], [[4ycm]]  - rATPase + macrolide<br />
**[[4ycn]], [[4ycm]]  - rATPase + macrolide<br />
**[[4y3u]]  - rATPase + phospholamban<br />
**[[4y3u]]  - rATPase + phospholamban<br />
**[[6zhf]], [[6zhg]] - LmATPase – Listeria monocytogenes<br />
**[[6zhh]] - LmATPase (mutant) + phosphocholine<br />


*''Zn+2 transporting ATPase''
“Zn+2 ATPase''


**[[2ofg]], [[2ofh]] - sATPase N-terminal – NMR<br />
**[[2ofg]], [[2ofh]] - sATPase N-terminal – NMR<br />
**[[4umw]], [[4umv]] - ATPase +Mg – ''Shigella sonni''<br />
**[[4umw]], [[4umv]] - ATPase +Mg – Shigella sonni<br />
 
“Cd+2 ATPase''
 
**[[7qbz]], [[7qc0]] - ATPase – Sulfitobacter<br />


*''K+ transporting ATPase''
*''K+ transporting ATPase''
Line 337: Line 283:
**[[2ynr]], [[4ux2]], [[4ux1]], [[5y0b]] – pATPase – Cryo EM<br />
**[[2ynr]], [[4ux2]], [[4ux1]], [[5y0b]] – pATPase – Cryo EM<br />
**[[5ylv]] – pATPase + pyridine derivative<br />
**[[5ylv]] – pATPase + pyridine derivative<br />
**[[5ylu]] – pATPase + vonoprazan<br />
**[[5ylu]], [[7w47]], [[7w48]], [[7w49]], [[7w4a]] – pATPase + drug<br />
**[[6jxh]] – pATPase (mutant) + K<br />
**[[6jxh]] – pATPase (mutant) + K<br />
**[[6jxk]] – pATPase + Rb<br />
**[[6jxk]] – pATPase + Rb<br />
**[[6jxi]], [[6jxj]] – pATPase (mutant) + Rb<br />
**[[6jxi]], [[6jxj]] – pATPase (mutant) + Rb<br />
**[[6hra]], [[6hrb]], [[7bgy]], [[7bh1]], [[7bh2]], [[7lc3]], [[7lc6]] – EcATPase – Cryo EM<br />
**[[7et1]], [[7efl]], [[7efm]], [[7efn]] – pATPase subunit beta + Na/K ATPase subunit alpha (mutant) + cholesterol – Cryo EM<br />
**[[7x20]], [[7x21]], [[7x22]], [[7x23]], [[7x24]] – raATPase subunit beta + Na/K ATPase subunit alpha (mutant) – Cryo EM<br />
**[[6hra]], [[6hrb]], [[7bgy]], [[7bh1]], [[7bh2]], [[7lc3]], [[7lc6]], [[7nnl]], [[7nnp]] – EcATPase – Cryo EM<br />
**[[2a00]], [[2a29]] - EcATPase NBD of KdpB+AMPPNP – NMR<br />
**[[2a00]], [[2a29]] - EcATPase NBD of KdpB+AMPPNP – NMR<br />
**[[1svj]], [[1u7q]] - EcATPase NBD of KdpB – NMR<br />
**[[1svj]], [[1u7q]] - EcATPase NBD of KdpB – NMR<br />
Line 360: Line 308:
*''H+ transporting ATPase''
*''H+ transporting ATPase''


**[[7vh5]], [[7vh6]] – yATPase - Cryo EM <br />
**[[5ksd]]  - AtATPase C terminal truncated<br />
**[[5ksd]]  - AtATPase C terminal truncated<br />
**[[1mhs]] - ATPase – ''Neurospora crassa''<br />
**[[1mhs]] - NcATPase – ''Neurospora crassa''<br />
**[[7op1]], [[7op3]], [[7op5]], [[7op8]] – CtATPase – Chaetomium thermophilum - Cryo EM <br />


*''Na+ transporting ATPase''
*''Na+ transporting ATPase''
Line 367: Line 317:
**[[2db4]], [[3aou]] - EhATPase subunit K <br />
**[[2db4]], [[3aou]] - EhATPase subunit K <br />
**[[3aon]] - EhATPase subunits D,G<br />
**[[3aon]] - EhATPase subunits D,G<br />
**[[3vr2]] - EhATPase subunits A,B<br />
**[[3vr2]], [[7cop]], [[7coq]], [[7cor]], [[7cos]] - EhATPase subunits A,B<br />
**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />
**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />
Line 394: Line 344:
**[[3ea0]] – ATPase ParA, fragment – ''Chlorobium tepidum''<br />
**[[3ea0]] – ATPase ParA, fragment – ''Chlorobium tepidum''<br />
**[[2qen]] – ATPase (mutant) Walker-type – ''Pyrococcus abyssi''<br />
**[[2qen]] – ATPase (mutant) Walker-type – ''Pyrococcus abyssi''<br />
**[[2r31]], [[2p4x]] – PdATPase ATP12 <br />
**[[2r31]], [[2p4x]] – PdATPase ATP12 <br />
**[[2zd2]] – PdATPase (mutant) ATP12<br />
**[[2zd2]] – PdATPase (mutant) ATP12<br />
**[[1d8s]] – EcATPase F1<br />
**[[1d8s]] – EcATPase F1<br />
Line 407: Line 357:
*''Phospholipid transporting ATPase''
*''Phospholipid transporting ATPase''


**[[6k7g]], [[6k7h]], [[6k7i]], [[6k7j]], [[6k7k]], [[6k7l]], [[6k7m]], [[6k7n]]  – hATPase + cell cycle control protein – Cryo EM <br />
**[[7lkp]] – hATPase – Cryo EM <br />
**[[7lkp]] – hATPase – Cryo EM <br />
**[[6k7g]], [[6k7h]], [[6k7i]], [[6k7j]], [[6k7k]], [[6k7l]], [[6k7m]], [[6k7n]], [[7py4]], [[7vgh]], [[7vgi]], [[7vgj]], [[7vsg]], [[7vsh]]  – hATPase + cell cycle control protein – Cryo EM <br />
**[[6lkn]]  – hATPase (mutant) + cell cycle control protein <br />
**[[6lkn]]  – hATPase (mutant) + cell cycle control protein <br />
**[[7ky5]], [[7ky6]], [[7ky7]], [[7kya]], [[7kyc]] – yATPase + LEM3 – Cryo EM <br />
**[[7drx]], [[7f7f]], [[7ky5]], [[7ky6]], [[7ky7]], [[7kya]], [[7kyc]] – yATPase + LEM3 – Cryo EM <br />
**[[7ky9]], [[7kyb]] – yATPase + LEM3 + ADP – Cryo EM <br />
**[[7ky9]], [[7kyb]] – yATPase + LEM3 + ADP – Cryo EM <br />
**[[7ky8]] – yATPase + LEM3 + AMPPCP – Cryo EM <br />
**[[7dsh]], [[7dsi]], [[7ky8]], [[7whv]], [[7whw]] – yATPase + LEM3 + AMPPCP – Cryo EM <br />
**[[6lcp]], [[6lcr]] – ATPase + cell cycle control protein – Chaetomium thermophilum - Cryo EM <br />
**[[6lcp]], [[6lcr]] – CtATPase + cell cycle control protein - Cryo EM <br />


*RNA-dependent ATPase
*RNA-dependent ATPase
Line 434: Line 384:
*Proteasome-associated ATPase
*Proteasome-associated ATPase


**[[8d6v]], [[8d6w]] – MtATPase subunits alpha, beta – Cryo EM<br />
**[[7pxc]] – MtATPase subunits alpha, beta + Pup – Cryo EM<br />
**[[3fp9]], [[3m9b]], [[3m9h]] – MtATPase intern domain<br />
**[[3fp9]], [[3m9b]], [[3m9h]] – MtATPase intern domain<br />
**[[3m91]], [[3m9d]] - MtATPase coiled coil domain + protein PUP<br />
**[[3m91]], [[3m9d]] - MtATPase coiled coil domain + protein PUP<br />
Line 444: Line 396:
**[[6pxi]] – EcATPase subunit HsIU+HsIV + ADP<br />
**[[6pxi]] – EcATPase subunit HsIU+HsIV + ADP<br />
**[[2wfw]] – ATPase substrate recognition domain – Rhodococcus erythropolis<br />
**[[2wfw]] – ATPase substrate recognition domain – Rhodococcus erythropolis<br />
**[[7mhb]] – ATPase subunit HsIU + ADP – Brucella abortus<br />


*Transitional endoplasmic reticulum ATPase residues 1-806
*Transitional endoplasmic reticulum ATPase residues 1-806
Line 544: Line 497:


**[[6n6l]], [[6n6m]], [[6n70]], [[6n71]], [[6n72]], [[6n73]], [[6n75]], [[6n76]] – ATPase (mutant) – Shigella flexneri<br />
**[[6n6l]], [[6n6m]], [[6n70]], [[6n71]], [[6n72]], [[6n73]], [[6n75]], [[6n76]] – ATPase (mutant) – Shigella flexneri<br />
* Plasma membrane ATPase
**[[7nxf]], [[7ny1]] – NcATPase – Cryo EM<br />


}}
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[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 08:42, 23 October 2022

3D Structures of ATPase

ATPase 3D structures

Updated on 23-October-2022

P-ATPase

  • Cu+2 transporting ATPase
    • 2kmv, 2kmx, 2arf, 2koy – hATPase NBD – human – NMR
    • 2kij - hATPase actuator domain – NMR
    • 1yjr, 1yjt, 1yju, 1yjv - hATPase (mutant) 6th soluble domain – NMR
    • 1y3j, 1y3k - hATPase 5th soluble domain – NMR
    • 2ew9 - hATPase 5th+6th soluble domains – NMR
    • 1s6o, 1s6u, 2lqb - hATPase 2nd soluble domain – NMR
    • 1q8l - hATPase 2nd MBD – NMR
    • 1aw0, 2aw0 - hATPase 4th MBD – NMR
    • 1kvi, 1kvj - hATPase 1st MBD – NMR
    • 5t7l - hATPase 1st MBD + Cu transport protein
    • 2k1r - hATPase MBD+ ATOX1 – NMR
    • 2rop, 2g9o, 2ga7 - hATPase MBD – NMR
    • 1fvq, 1fvs - hATPase – NMR
    • 3cjk – hATPase + Cu transporting protein ATX1
    • 3dxs - AtATPase RAN1 MBD (mutant) – Arabidopsis thaliana
    • 5lbd – AtATPase PAA1 N-domain
    • 5lbk – AtATPase PAA2 N-domain
    • 3voy, 3j08, 3j09 - AfATPase – Archaeoglobus fulgidus – CryoEM
    • 3skx, 3sky - AfATPase NBD
    • 3a1c – AfATPase NBD + AMPPCP
    • 3a1d - AfATPase NBD + ADP-Mg
    • 3a1e - AfATPase NBD (mutant) + AMPPCP
    • 2rml - BsATPase N-terminal – Bacillus subtilis – NMR
    • 2gcf - syATPase N-terminal - Synechocystis – NMR
    • 4a4j - syATPase N-terminal
    • 4a48 - syATPase
    • 2iye - SsATPase catalytic domain – Sulfolobus solfataricus
    • 2yj3 - SsATPase catalytic domain (mutant)
    • 2yj4, 2yj5, 2yj6 - SsATPase catalytic domain (mutant) + nucleotide
**3rfu, 4bbj, 4bev, 4byg – LpATPase – Legionella pneumophila


“Zn+2 ATPase
    • 2ofg, 2ofh - sATPase N-terminal – NMR
    • 4umw, 4umv - ATPase +Mg – Shigella sonni

“Cd+2 ATPase

  • K+ transporting ATPase
  • As+ transporting ATPase
    • 3h84, 3idq, 3a36, 3a37 - yATPase GET3
    • 4pwx, 5bwk - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein
    • 5bw8 - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein
    • 4xwo - yATPase GET3 + antibody + Sec22
    • 4xvu - yATPase GET3 + antibody + NYV1
    • 4xtr - yATPase GET3 + antibody + pep12p
    • 3sja, 3sjb, 3sjc, 3sjd, 3zs8, 3zs9, 3b2e, 3vlc - yATPase GET3 + GET1 cystolic domain
    • 1ii0, 1f48, 1ii9 - EcATPase
    • 1ihu – EcATPase+Mg+ADP+AlF3
    • 3ibg - ATPase GET3 – Aspergillus fumigatus
  • H+ transporting ATPase
    • 7vh5, 7vh6 – yATPase - Cryo EM
    • 5ksd - AtATPase C terminal truncated
    • 1mhs - NcATPase – Neurospora crassa
    • 7op1, 7op3, 7op5, 7op8 – CtATPase – Chaetomium thermophilum - Cryo EM
  • Na+ transporting ATPase
    • 2db4, 3aou - EhATPase subunit K
    • 3aon - EhATPase subunits D,G
    • 3vr2, 7cop, 7coq, 7cor, 7cos - EhATPase subunits A,B
    • 3vr4, 3vr5 - EhATPase subunits A,B,D,G
    • 3vr3 - EhATPase subunits A,B + AMPPNP
    • 3vr6 - EhATPase subunits A,B,D,G + AMPPNP
    • 1yce - ATPase rotor ring – Ilyobacter tartaricus
  • H/K transporting ATPase
  • Mg+2 transporting ATPase
    • 3gwi – EcATPase P-1 NBD
  • Arg/ornithine transporting ATPase
    • 1h8e – bATPase+ADP+AlF4+ADP+SO4
    • 1h8h -bcATPase+ AMPPNP
    • 1efr - bATPase+efrapeptin
    • 3cf0, 3cf1, 3cf3 – mATPase NBD+ADP – mouse
    • 3cf2 - mATPase NBD+ADP+AMP-PNP
    • 1kmh - sATPase alpha subunit+tentoxin
    • 3fks – yATPase
    • 3ea0 – ATPase ParA, fragment – Chlorobium tepidum
    • 2qen – ATPase (mutant) Walker-type – Pyrococcus abyssi
**2r31, 2p4x – PdATPase ATP12
    • 2zd2 – PdATPase (mutant) ATP12
    • 1d8s – EcATPase F1
    • 1vdz – PhATPase subunit A – Pyrococcus horikoshii
    • 3md0 – MtATPase+GDP
  • Monosaccharide transporting ATPase
    • 5dte – AsATPase – Actinobacillus succinogenes
    • 4zjp – AsATPase + ribopyranose
  • Phospholipid transporting ATPase
  • RNA-dependent ATPase
    • 3eaq, 3i31, 3i32 – TtATPase fragment
    • 4kbg, 4kbf - TtATPase helicase core domain
    • 5mao - TtATPase RRM domain
    • 4i69, 4i68 - TtATPase RRM domain (mutant)
    • 4i67 - TtATPase RRM domain + RNA
    • 3mwj – TtATPase N-terminal (mutant)
    • 3mwk, 3nbf – TtATPase N-terminal + 8-oxo-AMP
    • 3mwl - TtATPase N-terminal (mutant) + 8-oxoadenine
    • 3nej - TtATPase reca-like domain (mutant)
  • DNA-dependent ATPase
    • 5tnu - ATPase – Sulfolobus tokodaii
    • 6p4o, 6p4w - ATPase + endonuclease BAX1 – Sulfurisphaera tokodaii
  • Proteasome-associated ATPase
    • 8d6v, 8d6w – MtATPase subunits alpha, beta – Cryo EM
    • 7pxc – MtATPase subunits alpha, beta + Pup – Cryo EM
    • 3fp9, 3m9b, 3m9h – MtATPase intern domain
    • 3m91, 3m9d - MtATPase coiled coil domain + protein PUP
    • 5kzf – MtATPase residues 98-609
    • 5kwa – MtATPase residues 22-529
    • 6kww – ATPase subunit HsIU – Staphylococcus aureus
    • 5txv – EcATPase subunit HslU
    • 6pxk, [[[6pxl|6pxl]], 6pxx – EcATPase subunit HsIU + ADP
    • 5ji3, 5ji2 – EcATPase subunits HslU+HslV
    • 6pxi – EcATPase subunit HsIU+HsIV + ADP
    • 2wfw – ATPase substrate recognition domain – Rhodococcus erythropolis
    • 7mhb – ATPase subunit HsIU + ADP – Brucella abortus
  • Transitional endoplasmic reticulum ATPase residues 1-806
  • Transitional endoplasmic reticulum ATPase residues 1-480
    • 3hu1, 3hu2, 3hu3 – hTer-ATPase + ATPGS
    • 4ko8, 4kln, 5dyg – hTer-ATPase (mutant) + ATPGS
    • 5dyi – hTer-ATPase + ADP
    • 4kod – hTer-ATPase (mutant) + ADP
    • 5kiy, 5kiw - hTer-ATPase (mutant) + Selenoprotein S
  • Transitional endoplasmic reticulum ATPase residues 1-200
    • 3qc8, 3qq8, 3qwz - hTer-ATPase + FAS-associated factor 1
    • 3qq7 - hTer-ATPase
    • 3tiw - hTer-ATPase + E3 ubiquitin-protein ligase peptide
    • 5glf - hTer-ATPase + derlin-1 peptide
    • 5epp - hTer-ATPase N + rhomboid-related protein 4 peptide
    • 4kdl, 4kdi - hTer-ATPase + ubiquitin thioesterase OTU1
    • 5b6c - hTer-ATPase + ubiquitin fusion degradation protein
    • 5x4l - hTer-ATPase + UBX domain-containing protein
    • 1s3s - mTer-ATPase ND1 domain + P47 C terminal
    • 4rv0 - Ter-ATPase N terminal + nuclear protein localization protein – Drosophila melanogaster
  • Sarcoplasmic/endoplasmic reticulum ATPase
  • LAO/AO transport system ATPase
    • 3nxs – MsATPase + GDP
    • 6cum – MsATPase
  • DNA double-strand repair ATPase (Rad50)
    • 3aux – MjRad50 – Methanocaldococcus jannaschii
    • 3auy - MjRad50 + ADP
    • 3av0 - MjRad50 + ATP
    • 5f3w - MjRad50 + MRE11 + ATPGS
    • 5dny - MjRad50 + MRE11 + DNA
    • 3qg5 – TmRad50 NBD + MRE11
    • 3qkr, 3qks, 3qf7 - PfRad50 NBD + MRE11 – Pyrococcus furiosus
    • 4nck, 4nci, 4nch - PfRad50 NBD (mutant)
    • 4ncj - PfRad50 NBD (mutant) + BeF3 + ADP
    • 3qkt - PfRad50 NBD + AMPPNP
    • 3qku - PfRad50 NBD + AMPPNP + MRE11
  • MipZ ATPase
    • 2xit, 2xj4 – CcMipZ – Caulobacter crescentus
    • 2xj9 – CcMipZ (mutant)
  • ATPase Rava
    • 5fl2, 4upf – EcATPase LARA domain + lysine decarboxylase
    • 4upb, 6q7l, 6q7m – EcATPase + lysine decarboxylase – Cryo EM
    • 3nbx – EcATPase Rava + ADP
    • 6sza, 6szb – EcATPase Rava + ADP – Cryo EM
  • FlaI ATPase
    • 4ihq, 4ii7 – ATPase (mutant) – Sulfolobus acidocaldarius
  • Vescicle-fusing ATPase
    • 6mdm, 6mdn – haATPase + SNAP-25 + syntaxin-1A + VAMP-2 + NSF attachment protein – hamster – Cryo EM
    • 6mdo, 6mdp – haATPase + SNAP-25 – Cryo EM
  • ATPase Invc
    • 6sdx – ATPase – Salmonella enterica
  • ATPase in ribosome
    • 6tmf – ATPase – Thermococcus celer
  • P5A-type ATPase
  • ATPase SpaL/MxiB
  • Plasma membrane ATPase

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