3a8s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:35, 21 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure analysis of the fluorescent protein KillerRed==
==Crystal structure analysis of the fluorescent protein KillerRed==
-
<StructureSection load='3a8s' size='340' side='right' caption='[[3a8s]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='3a8s' size='340' side='right'caption='[[3a8s]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3a8s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A8S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A8S FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3a8s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anthomedusae_sp._DC-2005 Anthomedusae sp. DC-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A8S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A8S FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a8s OCA], [http://pdbe.org/3a8s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a8s RCSB], [http://www.ebi.ac.uk/pdbsum/3a8s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a8s ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a8s OCA], [https://pdbe.org/3a8s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a8s RCSB], [https://www.ebi.ac.uk/pdbsum/3a8s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a8s ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2TCH5_9CNID Q2TCH5_9CNID]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 12: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a8/3a8s_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a8/3a8s_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 19: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Anthomedusae sp. dc-2005]]
+
[[Category: Anthomedusae sp. DC-2005]]
-
[[Category: Kitago, Y]]
+
[[Category: Large Structures]]
-
[[Category: Matsuda, T]]
+
[[Category: Kitago Y]]
-
[[Category: Nagai, T]]
+
[[Category: Matsuda T]]
-
[[Category: Sakai, N]]
+
[[Category: Nagai T]]
-
[[Category: Takemoto, K]]
+
[[Category: Sakai N]]
-
[[Category: Fluorescent protein]]
+
[[Category: Takemoto K]]
-
[[Category: Phototoxicity]]
+

Current revision

Crystal structure analysis of the fluorescent protein KillerRed

PDB ID 3a8s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools