Arabidopsis thaliana PIN-FORMED 3 (AtPIN3)
From Proteopedia
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== Structure == | == Structure == | ||
| - | AtPIN3 is its <scene name='10/1096831/Apo_state_of_pin3/1'>apo state</scene> is a homodimer with 10 transmembrane (TM1-TM10) domains each [[ | + | AtPIN3 is its <scene name='10/1096831/Apo_state_of_pin3/1'>apo state</scene> is a homodimer with 10 transmembrane (TM1-TM10) domains each [[#Figure 1:Image:PIN.png]]. Both the N and the C terminal of the protein lie on the extracellular side. The 10 TM domains are divided into two groups a scaffold domain (TM1–2 and 6–7) and a transport domain (TM3–5 and 8–10). |
[[Image:PIN.png|thumb|center|800px|Figure 1:The transmembrane domains and cytoplasmic domains of one chain represented in their proper confirmation and as a simplified diagram. Figure obtained from: Reference Figure 1F and 1G]] | [[Image:PIN.png|thumb|center|800px|Figure 1:The transmembrane domains and cytoplasmic domains of one chain represented in their proper confirmation and as a simplified diagram. Figure obtained from: Reference Figure 1F and 1G]] | ||
Revision as of 09:43, 30 November 2025
Contents |
AtPIN3
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Structure
AtPIN3 is its is a homodimer with 10 transmembrane (TM1-TM10) domains each #Figure 1:Image:PIN.png. Both the N and the C terminal of the protein lie on the extracellular side. The 10 TM domains are divided into two groups a scaffold domain (TM1–2 and 6–7) and a transport domain (TM3–5 and 8–10).
The helices 1, 2 and 7 of the scaffold domains are involved in dimerization through symmetric interactions with a surface area of 1516 Å. The tilted TM7 interacts with TM 1, TM2 and TM7 of the other subunit through hydrophobic packaging. TM2 establishes hydrophobic packaging at the base of the dimer. This combined scaffold domain remains static and has the transporter domain on either side of it.
The transport domain is predicted to undergo up-down rigid-body motion in an elevator-like model (Figure 2). Two weak helices TM4 and TM9 break in the middle and cross and connect to each other as short loops. These may provide a substrate binding site and allow for confirmational changes during auxin transport. A solvent accessible pathway is present between the scaffold and the transport domain. This was suggested as the location for the binding of IAA (green link. The elevator model is supported by a structural alignment of PIN3 in its apo and IAA bound state, which shows a movement of the transport domain 2-3 Å towards the scaffold domain once AA binds.
The protein has a cytosolic domain which contains the cytosolic extension of TM5, an Amphiphilic helix (AH) and 3 beta sheets (β1–3). The loop between the AH and β3 has many phosphorylation sites that regulate the subcellular localization and transport activity of the protein.
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