Talk:Green Fluorescent Protein

From Proteopedia

Jump to: navigation, search

Contents

List of figures: Green_Fluorescent_Protein

Initial view

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1ema_gfp_default/2.spt

coords: https://proteopedia.org/cgi-bin/getfrozenstructure?c633a54d03b8b50318876fc5555cdc4c


default scene

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1ema_gfp_default/2.spt

coords: same as Initial view


secondary structure

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1ema_gfp_barrel/2.spt

coords: same as Initial view


\"stripes\"

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Water_stripes/1.spt

coords: https://proteopedia.org/cgi-bin/getfrozenstructure?a144edeb1a0e1f7ef8ec555f19d99243


α-helix

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Central_helix/1.spt

coords: same as \"stripes\"


perpendicular

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Perpendicular/1.spt

coords: same as \"stripes\"


contacts

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Spacefill/1.spt

coords: same as \"stripes\"


chromophore

script: https://proteopedia.org/wiki/scripts/10/100139/Chromophore/2.spt Available on this page: Green_Fluorescent_Protein

coords: same as \"stripes\"


top view

script: https://proteopedia.org/wiki/scripts/10/100139/Green_fluorescent_protein/1.spt Available on this page: Green_Fluorescent_Protein

coords: same as Initial view


4-(p-hydroxybenzylidene)-imidazolidin-5-one

script: https://proteopedia.org/wiki/scripts/10/100139/Chromophore_structure/3.spt Available on this page: Green_Fluorescent_Protein

coords: same as \"stripes\"

Chromophore structure post-translational modifications

larger conjugated system

script: https://proteopedia.org/wiki/scripts/10/100139/Chromophore/3.spt Available on this page: Green_Fluorescent_Protein

coords: same as \"stripes\"


four water molecules

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Water_molecules/1.spt

coords: same as \"stripes\"


side chains

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Gln69_glu222/1.spt

coords: same as \"stripes\"


polar interactions

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Polar_interactions/2.spt

coords: same as \"stripes\"


edge-face interaction

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Edge_face_interaction/1.spt

coords: same as \"stripes\"


base

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Arg96/1.spt

coords: same as \"stripes\"


truncated the ends

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Truncated_ends/3.spt

coords: same as \"stripes\"


see without truncated ends

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1ema_gfp_barrel/2.spt

coords: same as Initial view


amino terminus

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/Amino_terminus/2.spt

coords: same as \"stripes\"


dimer

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1gfl/1.spt

coords: https://proteopedia.org/cgi-bin/getfrozenstructure?cef2bb867c0302e8598fb8875c984cf4


multimers

script: https://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1w7s/1.spt

coords: https://proteopedia.org/cgi-bin/getfrozenstructure?22ea3e9e5eef2bdbdb16d8b8ebd93110

Jmol commands: buttons etc

make bonds

select (64.C or 66.N1 or 66.C3 or 68.N); connect 1.1 1.6; select 64, 66, 68; wireframe 0.2;

Fancy, high-quality cartoons on/off

if (~fancyoff); set ribbonborder off; set antialiasdisplay off;~fancyoff=false; else; set ribbonborder on; set antialiasdisplay on; select protein; cartoon on; ~fancyoff=true; endif;\n

⚞Thr 65⚟

select (*.C1, *.CA1, *.N1, *.CB1, *.CG1, *.OG1) and 66; selectionHalos ON; delay 1.5;selectionHalos OFF;

⚞Tyr 66⚟

select (*.C2, *.O2, *.CA2, *.N2, *.CB2, *.CG2, *.CD1, *.CD2, *.CE1, *.CE2, *.CZ, *.OH) and 66; selectionHalos ON; delay 1.5;selectionHalos OFF;

⚞Gly 67⚟

select (*.O3,*.C3,*.CA3,*.N3) and 66; selectionHalos ON; delay 1.5;selectionHalos OFF;

Fancy, high-quality cartoons on/off

if (~fancyoff); set ribbonborder off; set antialiasdisplay off;~fancyoff=false; else; set ribbonborder on; set antialiasdisplay on; select protein; cartoon on; ~fancyoff=true; endif;\n

Fancy, high-quality cartoons on/off

if (~fancyoff); set ribbonborder off; set antialiasdisplay off;~fancyoff=false; else; set ribbonborder on; set antialiasdisplay on; select protein; cartoon on; ~fancyoff=true; endif;\n

Summary

Total of green links: 21

Total of Jmol buttons etc: 7

coordinates used

3D scenes

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis, Dana Emmert

Personal tools