Creating a page in Proteopedia is easy and fun!
The first step, before you can start editing and creating Proteopedia pages, you must attain a user ID. Press the link on your upper right corner whee it says Log in / request account and follow the instructions. For this tutorial, you can use the student account given by the instructor.
| Scenes are easy to create.
You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
Adding and changing structures in your page
- go to https://proteopedia.org and type ‘Hemoglobin’ in the empty white search box on the left-hand toolbar, then press ‘Go’.
- Explore the first section. Press the green links. Stop before ‘Hemoglobin subunit binding O2’
- Now type ‘Peptide’ in the search box and press ‘Go’. Explore this page. again, see what the green links do.
- Navigate back to the [Main Page] by clicking the link ‘Main Page’ on the left-hand toolbar.
- Scroll down to ‘What can Proteopedia do for me’ and in the ‘Educators’ column, click on the link ‘tutorials or molecular scenes’, you will be taken to a new page.
- Now click on the link titled ‘Structural_Templates’
- Scroll down to the section titled ‘Secondary structure elements’.
- Explore this section, but stop before the section titled ‘Turns and loops’
STOP here
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:https://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
|
What are we going to learn?
How to create your own pages in Proteopedia, including 3D structures and green links.
Next page (2)
References
