Laccase 3D structures: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Michal Harel (talk | contribs) No edit summary |
Michal Harel (talk | contribs) No edit summary |
||
| (9 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
*Laccase | *Laccase or multicopper oxidase | ||
**[[1v10]] – Lac + Cu – ''Rigidoporus lignosus''<br /> | **[[1v10]] – Lac + Cu – ''Rigidoporus lignosus''<br /> | ||
| Line 12: | Line 12: | ||
**[[5anh]] – Lac + Cu – ''Basidiomycete''<br /> | **[[5anh]] – Lac + Cu – ''Basidiomycete''<br /> | ||
**[[5ehf]] – Lac + Cu – ''Antrodiella faginea''<br /> | **[[5ehf]] – Lac + Cu – ''Antrodiella faginea''<br /> | ||
**[[9f1t]], [[9f3z]] – Lac + Cu – ''Oenococcus oeni''<br /> | |||
**[[4a2d]], [[4a2e]], [[4a2f]], [[4a2g]], [[4a2h]], [[5a7e]] – Lac + Cu – ''Coriolopsis gallica''<br /> | **[[4a2d]], [[4a2e]], [[4a2f]], [[4a2g]], [[4a2h]], [[5a7e]] – Lac + Cu – ''Coriolopsis gallica''<br /> | ||
**[[3sqr]], [[4x4k]] – BaLac + Cu – ''Botrytis aclada''<br /> | **[[3sqr]], [[4x4k]] – BaLac + Cu – ''Botrytis aclada''<br /> | ||
**[[3v9e]] – BaLac (mutant) + Cu <br /> | **[[3v9e]] – BaLac (mutant) + Cu <br /> | ||
**[[2xuw]], [[2xvb]] – TtLac – ''Thermus thermophilus''<br /> | **[[2xuw]], [[2xvb]] – TtLac – ''Thermus thermophilus''<br /> | ||
**[[2yap]], [[5jx9]], [[5k0d]], [[5k15]], [[5k3k]], [[5k5k]], [[5k7a]], [[5k84]] – TtLac + Cu <br /> | **[[2yap]], [[5jx9]], [[5k0d]], [[5k15]], [[5k3k]], [[5k5k]], [[5k7a]], [[5k84]], [[6q29]], [[6tyr]], [[6w2k]], [[6w9x]], [[6wcg]], [[6wch]], [[6wcl]], [[6wcm]], [[6wcn]], [[6wcp]] – TtLac + Cu <br /> | ||
**[[2xu9]] – TtLac (mutant) + Cu <br /> | **[[2xu9]], [[9cpm]] – TtLac (mutant) + Cu <br /> | ||
**[[2yae]], [[5jrr]] – TtLac + Cu + O2 <br /> | **[[2yae]], [[5jrr]] – TtLac + Cu + O2 <br /> | ||
**[[2yaf]], [[2yah]], [[2yam]], [[2yao]], [[2yaq]], [[2yar]], [[5afa]] – TtLac + Cu + OH <br /> | **[[2yaf]], [[2yah]], [[2yam]], [[2yao]], [[2yaq]], [[2yar]], [[5afa]] – TtLac + Cu + OH <br /> | ||
**[[4ai7]] – TtLac + Hg <br /> | |||
**[[2xyb]] – Lac + Cu + O2 – ''Pycnoporus cinnabarinus'' <br /> | **[[2xyb]] – Lac + Cu + O2 – ''Pycnoporus cinnabarinus'' <br /> | ||
**[[3pps]] – Lac + Cu + O2 – ''Thielavia arenaria'' <br /> | **[[3pps]] – Lac + Cu + O2 – ''Thielavia arenaria'' <br /> | ||
**[[3cg8]] – | **[[3cg8]] – ScLac + Cu + O – ''Streptomyces coelicolor'' <br /> | ||
**[[8u8p]], [[8u8q]], [[8u8r]], [[8u8s]], [[8u8t]], [[9nji]], [[9njj]] – ScLac (mutant) + Cu + OH <br /> | |||
**[[4f7k]] – Lac – uncultured bacterium<br /> | **[[4f7k]] – Lac – uncultured bacterium<br /> | ||
**[[5nq7]], [[5nq8]], [[5nq9]] – Lac + Cu + O2 – ''Trametes sanguinea''<br /> | **[[5nq7]], [[5nq8]], [[5nq9]] – Lac + Cu + O2 – ''Trametes sanguinea''<br /> | ||
**[[5z1x]], [[5z22]] – Lac + Cu + O2 – '' | **[[3div]] – CmLac + Cu – ''Cerrena maxima''<br /> | ||
**[[5z1x]], [[5z22]] – CmLac + Cu + O2 <br /> | |||
**[[6h5y]] – Lac (mutant) + Cu – ''Aspergillus oryzae''<br /> | |||
**[[4e9w]], [[4e9x]], [[4e9y]] – Lac + Cu + O2 – ''bacterium''<br /> | |||
**[[9gly]] – Lac + Cu – synthetic<br /> | |||
*Laccase 1 | *Laccase 1 | ||
| Line 46: | Line 51: | ||
**[[1kya]] – Lac2 + Cu + arylamine – ''Trametes versicolor''<br /> | **[[1kya]] – Lac2 + Cu + arylamine – ''Trametes versicolor''<br /> | ||
**[[5e9n]], [[6rgh]] – SmLac2 + Cu – ''Steccherinum murashkinskyi''<br /> | **[[5e9n]], [[6rgh]] – SmLac2 + Cu – ''Steccherinum murashkinskyi''<br /> | ||
**[[5mej]], [[5mew]], [[5mhu]], [[5mhv]], [[5mhw]], [[5mhx]], [[5mhy]], [[5mhz]], [[5mi1]], [[5mi2]], [[5mia]], [[5mib]], [[5mic]], [[5mid]], [[5mie]], [[5mig]], [[6rgp]], [[6rhh]], [[6rhi]], [[6rho]], [[6rhp]] | **[[5mej]], [[5mew]], [[5mhu]], [[5mhv]], [[5mhw]], [[5mhx]], [[5mhy]], [[5mhz]], [[5mi1]], [[5mi2]], [[5mia]], [[5mib]], [[5mic]], [[5mid]], [[5mie]], [[5mig]], [[6rgp]], [[6rhh]], [[6rhi]], [[6rho]], [[6rhp]] – SmLac2 + Cu + O2<br /> | ||
**[[6rhr]], [[6rhu]], [[6rhx]], [[6ri0]], [[6ri2]] – SmLac2 + Cu + Cl<br /> | |||
**[[6ri4]], [[6ri6]], [[6ri8]], [[6rii]], [[6rik]], [[6ril]] – SmLac2 + Cu + F<br /> | |||
*Laccase 3 | |||
**[[6klg]] – maLac3 + Cu + O2 - maize <br /> | |||
**[[6kli]] – maLac3 + Cu + O2 + sinapyl<br /> | |||
**[[6klj]] – maLac3 + Cu + O2 + coniferyl<br /> | |||
*Two-domain laccase or small laccase | *Two-domain laccase or small laccase | ||
**[[2zwn]] – Lac + Cu + Cu-O-Cu – metagenomes<br /> | **[[2zwn]] – Lac + Cu + Cu-O-Cu – metagenomes<br /> | ||
**[[5lhl]] – SgLac + Cu + O2 – ''Streptomyces griseoflavus'' <br /> | **[[5lhl]], [[6zij]] – SgLac + Cu + O2 – ''Streptomyces griseoflavus'' <br /> | ||
**[[5mkm]], [[5o3k]], [[5o4i]], [[5o4q]], [[6fc7]], [[6fdj]] – SgLac (mutant) + Cu + O2 + O <br /> | **[[6rh9]], [[7pen]], [[7pes]], [[7pfr]], [[7ptm]], [[7pu0]], 7puh]] – SgLac (mutant) + Cu + O2<br /> | ||
**[[3tbb]], [[3tbc]], [[ | **[[5mkm]], [[5o3k]], [[5o4i]], [[5o4q]], [[6fc7]], [[6fdj]], [[8p9u]], [[8p9v]] – SgLac (mutant) + Cu + O2 + O <br /> | ||
**[[6rhq]] – SgLac (mutant) + Cu <br /> | |||
**[[6s0o]] – SgLac + Cu + H2O2 <br /> | |||
**[[6zip]] – SgLac (mutant) + Cu + H2O2 <br /> | |||
**[[3tas]], [[3tbb]], [[3tbc]] – Lac + Cu + O2 – ''Streptomyces viridosporus'' <br /> | |||
**[[8aip]] – ScaLac + Cu + O2 – ''Streptomyces carpinensis''<br /> | |||
**[[9ix9]] – ScaLac (mutant) + Cu + O2 <br /> | |||
**[[4n8u]] – Lac + Cu – ''Streptomyces viridochromogenus'' <br /> | |||
**[[4gyb]], [[4naj]], [[4nb7]] – Lac + Cu – ''Streptomyces lividans'' <br /> | |||
**[[7bdn]] – ScLac + Cu <br /> | |||
**[[7bfm]] – ScLac (mutant) + Cu <br /> | |||
**[[4gxf]], [[4gy4]] – ScLac (mutant) + Cu + O<br /> | |||
**[[7w6v]] – ScLac + Co <br /> | |||
**[[3kw8]] – ScLac + Cu + Fe<br /> | |||
**[[9kol]] – ScLac + Cu + Ru<br /> | |||
*Blue laccase | |||
**[[3t6v]], [[3t6w]], [[3t6x]], [[3t6z]], [[3t71]] – Lac + Cu – ''Steccherinum ochraceum''<br /> | |||
**[[2qt6]] – Lac + Cu – ''Lentinus tigrinus''<br /> | |||
**[[8r7i]] – Lac + Cu + OH – termite<br /> | |||
**[[2hrg]], [[2hrh]] – Lac + Cu – ''Funalia trogii''<br /> | |||
**[[4jhu]], [[4jhv]] – Lac + Cu – ''Coriolopsis caperata''<br /> | |||
**[[6im8]] – EcLac <br /> | |||
*CotA laccase | *CotA laccase or spore coat protein A | ||
**[[ | **[[1gsk]], [[1w6l]], [[1w6lw]], [[1w8e]], [[2x87]], [[2x88]], [[4q8k]], [[4yvu]], [[5zlj]] – BsCotA + Cu – ''Bacillus subtilis'' | ||
**[[ | **[[2bhf]] - BsCotA reduced | ||
**[[2wsd]], [[ | **[[3zdw]] – BsCotA + Cu + O2 <br /> | ||
**[[ | **[[4q8b]] – BsCotA + Cu + O2 + sinaptic acid<br /> | ||
**[[7y8b]] – BsCotA + Cu + O2 + syringic acid<br /> | |||
**[[7y8c]] – BsCotA + Cu + syringic acid derivative<br /> | |||
**[[2wsd]], [[5zlk]], [[5zll]], [[5zlm]] – BsCotA (mutant) + Cu | |||
**[[4a66]], [[4a67]], [[4a68]], [[4ako]], [[4akp]], [[4akq]] – BsCotA (mutant) + Cu + O2<br /> | |||
**[[1of0]] - BsCotA + ABTS | |||
**[[4yvn]] - BsCotA + ABTS + Cu<br /> | |||
**[[9bd5]] – CotA + Cu – ''Bacillus paralicheniformis'' | |||
*CotS laccase | *CotS laccase | ||
| Line 67: | Line 109: | ||
**[[1nps]] – CotSl N terminal – ''Myxococcus xanthus'' | **[[1nps]] – CotSl N terminal – ''Myxococcus xanthus'' | ||
* | *Multicopper oxidase | ||
**[[ | **[[5lww]] – Lac + Cu – ''Aspergillus niger''<br /> | ||
**[[6vow]], [[6vox]] – Lac + Cu + Cu2O – ''Pseudomonas thermotolerans''<br /> | |||
**[[5g3c]], [[5g3b]], [[5g3d]], [[5g3e]], [[5g3f]], [[5g3g]], [[5g3h]] – TtLac + Cu <br /> | |||
**[[3gdc]] – Lac + Cu – ''Arthrobacter''<br /> | |||
**[[3aw5]] – Lac + Cu – ''Pyrobaculum aerophilum''<br /> | |||
**[[6xiz]] – Lac + Cu – ''Pediococcus acidilactici''<br /> | |||
**[[6xj0]] – Lac + Cu + CuO – ''Pediococcus pentosaceus''<br /> | |||
**[[3ta4]], [[3t9w]] – Lac + Cu + H2O2 – ''Amycolatopsis''<br /> | |||
**[[4m3h]], [[4wtq]] – SsLac + Cu + O – ''Streptomyces sviceus'' <br /> | |||
**[[4uah]], [[4uan]], [[4w1t]], [[6y4a]], [[6yzd]], [[6yzy]] – SsLac (mutant) + Cu <br /> | |||
**[[6yo5]], [[6yzf]] – SsLac (mutant) + peptide + Cu <br /> | |||
*CueO laccase See [[Blue copper oxidase CueO]] | *CueO laccase See [[Blue copper oxidase CueO]] | ||
Latest revision as of 08:43, 21 October 2025
3D structures of laccase
Updated on 21-October-2025