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| *RNase MC1 | | *RNase MC1 |
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| **[[1v9h]], [[1j1f]], [[1j1g]] - McRNase MC1 (mutant) - ''Momordica charantia''<br /> | | **[[1v9h]], [[1j1f]], [[1j1g]] - McRNase MC1 (mutant) + nucleotide - ''Momordica charantia''<br /> |
| | **[[1ucg]] - McRNase MC1 (mutant) <br /> |
| | **[[1uca]], [[1ucc]], [[1ucd]] - McRNase MC1 + nucleotide <br /> |
| | **[[1bk7]] - McRNase MC1 <br /> |
| | |
| | *RNase NT |
| | |
| | **[[1vcz]], [[1vd1]], [[1vd3]] - NgRNase NT + nucleotide - ''Nicotiana glutinosa''<br /> |
| | **[[1iyb]] - NgRNase NW <br /> |
| | |
| | *RNase P |
| | |
| | **[[3ok7]], [[3okb]], [[3q1q]], [[3q1r]] - TmRNase P + TmRNase P RNA + tRNAPhe <br /> |
| | **[[1nz0]] - TmRNase P <br /> |
| | **[[1d6t]] - RNase P - ''Staphylococcus aureus''<br /> |
| | **[[2a64]] - GsRNase P (mutant) <br /> |
| | **[[1a6f]], [[1nbs]], [[2jg4]] - BsRNase P (mutant) <br /> |
| | **[[1ts9]], [[1tsf]] - AfRNase P <br /> |
| | **[[1u9s]] - RNase P - synthetic <br /> |
| | **[[2avs]] - PfRNase P (mutant) - ''Pyrococcus furiosus'' <br /> |
| | **[[2k3r]]. [[2ki7]] - PfRNase P <br /> |
| | **[[2ljp]] - EcRNase P <br /> |
| | **[[2av5]] - PhRNase P component 2<br /> |
| | **[[1x0t]] - PhRNase P component 4<br /> |
| | **[[2zae]] - PhRNase P components 1+4<br /> |
| | **[[2czv]] - PhRNase P component 2 (mutant) +3<br /> |
| | **[[3iab]] - yRNase P subunits POP6+POP7 + RNase MRP P3 domain<br /> |
| | |
| | *RNase PH |
| | |
| | **[[3dd6]] - RNase PH - ''Bacillus anthracis'' <br /> |
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| }} | | }} |
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You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
Function
Disease
Relevance
Structural highlights
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:https://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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3D structures of ribonuclease
Updated on 18-December-2014
{"openlevels":0}
- RNase I
- 3mwq, 3mx8, 3i67, 3i6f, 3i6h, 3i6j, 3i7w, 3eux, 3euy, 3euz, 3ev0, 3ev1, 3ev2, 3ev3, 3ev4, 3ev5, 3ev6, 3dh5, 2e3w, 2g4w, 2g4x, 2gbq, 2blp, 2blz, 2jvt, 1jvv, 1js0, 1fs3, 1kf2, 1kf3, 1kf4, 1kf5, 1kf7, 1kf8, 1aqp, 1a2w, 1rnw, 1rnz, 1rno, 1rnq, 1rbx, 1ssc, 3srn, 4srn, 1srn, 5rsa, 1afu, 1bel, 1c0b, 1c0c, 1lsq, 1rat, 1rbn, 1rha, 1rhb, 1rnx, 1rny, 1rsm, 1xps, 1xpt, 2g8q, 2rat, 3mzq, 3mzr, 3rat, 3rn3, 4rat, 5rat, 6rat, 7rat, 7rsa, 8rat, 8rsa, 9rat, 9rsa, 3mwr, 4ao1 - bRNase I pancreatic - bovine
- 3a1r - bRNase I pancreatic - neutron
- 2aas - bRNase I pancreatic - NMR
- 3i7x, 3i7y, 3fkz, 3fl3, 3dh6, 3di7, 3di8, 3di9, 3dib, 3dic, 2oqf, 3bcm, 3bco, 3bcp, 2nui, 2op2, 1ymn, 1ymr, 1ymw, 2apq, 1izp, 1izq, 1izr, 1kh8, 1c8w, 1eic, 1eid, 1eie, 1dy5, 3rsd, 3rsk, 1ssa, 1ssb, 1a5p, 1a5q, 1c9v, 1c9x, 3rsp, 4rsd, 3ql1, 3ql2, 3rh1, 3rid - bRNase I pancreatic (mutant)
- 3lxo, 3jw1, 3djo, 3djp, 3djq, 3djv, 3djx, 3dxg, 3dxh, 2w5g, 2w5i, 2w5k, 2w5l, 2w5m, 3d6o, 3d6p, 3d6q, 3d7b, 3d8y, 3d8z, 2pca, 2g8r, 1z6d, 1z6s, 1u1b, 1w4o, 1w4p, 1w4q, 1wbu, 1o0f, 1jn4, 1jvu, 1f0v, 1ruv, 1rnm, 1rnn, 1rbw, 1rca, 1rpf, 1rpg, 1rph, 1rnc, 1rnd, 1rob, 1rta, 1rtb, 1afk, 1afl, 1eos, 1eow, 1o0h, 1o0m, 1o0n, 1o0o, 1qhc, 1rcn - bRNase I pancreatic + nucleotide
- 1rar, 1ras - bRNase I pancreatic fluoroscent
- 6rsa - bRNase I pancreatic + nucleotide - neutron
- 3fl0, 3fl1, 4rsk - bRNase I pancreatic (mutant) + nucleotide
- 2xog, 2xoi, 2q4g, 1dfj, 4g8v, 4g8y, 4g90 - bRNase I pancreatic + inhibitor
- 2p42, 2p43, 2p44, 2p45, 2p46, 2p47, 2p48, 2p49, 2p4a, 1bzq, 3qsk - bRNase I + antibody
- 3f8g, 2e0j, 2e0l, 2e0m, 2e0o, 1h8x, 1e21, 1dza - hRNase I pancreatic (mutant) - human
- 2k11 - hRNase I pancreatic - NMR
- 1z7x - hRNase I pancreatic + inhibitor
- 33ljd, 3ln8, 2vq8, 2vq9 - ZeRNase I - Zebrafish
- 2pqx, 2pqv - EcRNase I - Escherichia coli
- 2z70, 2ea1 - EcRNase I + DNA
- 3tsr - mRNase I + inhibitor
- RNase II
- RNase III
- 2nue, 2nuf, 2nug, 1yyk, 1yyw, 4m2z, 4m30 - AaRNase III + RNA - Aquifex aeolicus
- 2ez6]], 1yyo, 1yz9, 1rc7 - AaRNase III (mutant) + RNA
- 1rc5, 1i4s, 1jfz - AaRNase III N terminal
- 1z5f - BuRNase III
- 2a11 - MtRNase III - Mycobacterium tuberculosis
- 1o0w - TmRNase III - Thermotoga maritima
- 1t4n, 1t4o - yRNase III - yeast - NMR
- 2lbs - yRNase III RNA-binding domain + RNA - NMR
- 2lup, 4oog - yRNase III RNA-binding domain + RNA
- 2luq - yRNase III RNA-binding domain
- 2kb5 - hRNase III - NMR
- 1dyt, 1qmt, 2khx - hRNase III
- 1h1h - hRNase III + nucleotide
- 3n3w, 3o2r - RNase III nuclease domain - Campylobacter jejuni
- RNase 4
- RNase 5
- RNase 6
- RNase 7
- RNase A
- 1rra - RNase A - rat
- 44j5z, 4j60, 4j61, 4j62, 4j63, 4j64, 4j65, 4j66, 4j67, 4j68, 4j69, 4j6a, 4mxf - bRNase A
- 4k7m - bRNase A (mutant)
- 2aas - bRNase A - NMR
- 4kxh - hRNase A
- 2e33 - bRNase A + F-box only protein 2
- 4l55 - bRNase A + aziru
- RNase B
- 1rbb - bRNase B
- 1rbj - bRNase B + tetranucleotide
- RNase BA
- 1x1u, 1x1x, 1x1y, 1b27, 1b2u, 1b3s, 1x1w - BaRNase BA + barstar (mutant) - Bacillus amyloliquefaciens
- 3da7, 1brs, 1bgs - BaRNase BA + barstar
- 1b2s, 2za4 - BaRNase BA (mutant) + barstar (mutant)
- 1brn, 2kf5, 2kf6, 1rnb - BaRNase BA + nucleotide
- 3kch, 2f4y, 2f56, 2f5m, 2f5w - BaRNase BA crosslinked
- 2kf3, 2kf4, 1fw7, 1bnr - BaRNase BA - NMR
- 1yvs, 1b2x, 1a2p, 1bni, 1bnj - BaRNase BA
- 1b20, 1b21, 1b2z, 1bne, 1bnf, 1bng, 1brh, 1bri, 1brj, 1brk, 1bns, 1brg, 1bsa, 1bsb, 1bsc, 1bsd, 1bse, 1bna, 1bao - BaRNase BA (mutant)
- RAase D
- RNase E
- 2vmk, 2c4r, 2bx2 - EcRNase E catalytic domain
- 1slj - EcRNase E S1 domain - NMR
- 1smx, 1sn8 - EcRNase E S1 domain
- 2vrt, 2c0b - EcRNase E catalytic domain + RNA
- 3h8a - EcRNase E recognition domain + enolase
- RNase F1
- 1fus, 1fut - GfRNase F1 + nucleotide - Gibberella fujikuroi
- 1rck, 1rci - GfRNase F1 - NMR
- RNase H
- 3h7i, 3h8s, 3h8w - T4RNase H (mutant) - Enterobacteria phage T4
- 2ihn - T4RNase H (mutant) + DNA
- 3h8j, 1tfr - T4RNase H
- 4e89 - RNase H - XMRV
- 2rpi, 1ril - TtRNase H - Thermus thermophilus
- 1rbr, 1rbs, 1rbt, 1rbu, 1rbv, 2rn2 - EcRNase H
- 1lav, 1law, 1rda, 1rdb, 1rdc - EcRNase H (mutant)
- 1jl2 - EcRNase H/TtRNase H
- 3d0p, 3ey1, 3i8d - BhRNase H (mutant) + DNA - Bacillus halodurans
- 1zbf - BhRNase H (mutant)
- 2r7y, 2g8f, 2g8h, 2g8i, 2g8k, 2g8u, 2g8v, 2g8w, 1zbi, 1zbl, 3twh, 3uld - BhRNase H (mutant) + RNA + DNA
- 4htu, 4hue, 4huf, 4hug - BhRNase H + DNA
- 4ibn - uRNase H - uncultured
- 4h8k - uRNase H + RNA + DNA
- RNase HI
- 2qk9, 2qkb, 2qkk - hRNase HI (mutant) + RNA + DNA
- 3h08 - RNase HI - Chlorobaculum tepidum
- 3aa2, 3aa3, 3aa4, 3aa5, 2yv0, 2z1g, 2z1h, 2z1i, 2z1j, 1wse, 1wsf, 1wsg, 1wsh, 1wsi, 1wsj, 1jxb, 1jl1, 1f21, 1kva, 1kvb, 1kvc, 1goa, 1gob, 1goc - EcRNase HI (mutant)
- 1g15, 1rdd, 1rnh - EcRNase HI
- 1rch - EcRNase HI - NMR
- 2zqb - SoRNase HI (mutant) - Shewanella oneidensis
- 2e4l - SoRNase HI
- 3bsu - hRNase HI catalytic domain + RNA + DNA
- 2ehg - RNase HI - Sulfolobus tokodaii
- 1qhk - yRNase HI N terminal - NMR
- 3u3g - uRNase HI
- 4e19, 4nyn - RNase HI - Halobacterium salinarium
- RNase HII
- 3p83 - AfRNase HII + DNA polymerase sliding clamp - Archaeoglobus fulgidus
- 1i39, 1i3a - AfRNase HII
- 3puf, 3p56, 3p5j - hRNase HII subunits α+β+γ
- 3kio - mRNase HII subunits α+β+γ - mouse
- 3o3g - TmRNase HII + DNA
- 3o3f, 3o3h, 4hht - TmRNase HII (mutant) + DNA
- 2etj - TmRNase HII
- 1x1p, 1io2 - TkRNase HII - Thermococcus kodakarensis
- 2dfe, 2dff, 2dfh - TkRNase HII (mutant)
- 1eke - RNase HII - Methanocaldococcus jannaschii
- RNase HIII
- 2d0a, 2d0b, 2d0c - GsRNase HIII - Geobacillus stearothermophilus
- 3asm - GsRNase HIII (mutant)
- 1uax - PhRNase HIII - Pyrococcus horikoshii
- 3vn5 - AaRNase HIII
- RNase J
- 3bk1 - TtRNase J
- 3bk2 - TtRNase J + nucleotide
- 3zq4 - BsRNase J1 - Bacillus subtilis
- RNase L
- 4o1o - pRNase L + oligoadenylate + CMP - pig
- 4o1p - pRNase L + oligoadenylate + AMPPNP
- 4oav - pRNase L + oligoadenylate + AMPPCP + RNA
- RNase LE
- 1dix - RNase LE - Solanum lycopersicum
- RNase MAR1
- 1xn4 - RNase MAR1 - Leishmania major
- 2b34 - RNase MAR1 - Caenorhabditis elegans
- RNase MS
- 1rms, 1rds - RNase MS - Aspergillus phoenicis
- RNase MC1
- 1v9h, 1j1f, 1j1g - McRNase MC1 (mutant) + nucleotide - Momordica charantia
- 1ucg - McRNase MC1 (mutant)
- 1uca, 1ucc, 1ucd - McRNase MC1 + nucleotide
- 1bk7 - McRNase MC1
- RNase NT
- 1vcz, 1vd1, 1vd3 - NgRNase NT + nucleotide - Nicotiana glutinosa
- 1iyb - NgRNase NW
- RNase P
- 3ok7, 3okb, 3q1q, 3q1r - TmRNase P + TmRNase P RNA + tRNAPhe
- 1nz0 - TmRNase P
- 1d6t - RNase P - Staphylococcus aureus
- 2a64 - GsRNase P (mutant)
- 1a6f, 1nbs, 2jg4 - BsRNase P (mutant)
- 1ts9, 1tsf - AfRNase P
- 1u9s - RNase P - synthetic
- 2avs - PfRNase P (mutant) - Pyrococcus furiosus
- 2k3r. 2ki7 - PfRNase P
- 2ljp - EcRNase P
- 2av5 - PhRNase P component 2
- 1x0t - PhRNase P component 4
- 2zae - PhRNase P components 1+4
- 2czv - PhRNase P component 2 (mutant) +3
- 3iab - yRNase P subunits POP6+POP7 + RNase MRP P3 domain
- RNase PH
- 3dd6 - RNase PH - Bacillus anthracis
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References
