ATPase 3D structures

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3D Structures of ATPase

ATPase 3D structures

Updated on 26-April-2021

(mutant)

    • 3i72, 3i73, 3ikj - TtATPS subunit A (mutant)
    • 4o1s - ATPS subunit A – Thermoplasma volcanium
    • 5bn5 – NeATPase + NEQ263 – Nanoarchaeum equitans
    • 5bn4 – NeATPase + NEQ263 + ANP
    • 5bn3 – NeATPase + NEQ263 + ADP
  • V-ATPase subunit B
    • 2c61 - MmATPS subunit B – Methanosarcina mazei
    • 2rkw, 3b2q, 3ssa, 3tgw, 3tiv - MmATPS subunit B (mutant)
    • 3dsr - MmATPS subunit B+ADP
    • 3eiu - MmATPS subunit B+ATP
  • V-ATPase subunit C
  • V-ATPase subunit D+F
    • 4rnd – yATPase subunit D+F
  • V-ATPase subunit E
    • 2kz9 – yATPase subunit E
    • 2dm9, 2dma, 4dt0 - PhATPS subunit E – Pyrococcus horikoshii
    • 2kk7 - MjATPS subunit E – Methanocaldococcus jannaschii
    • 3v6i – TtATPS subunit E + VAPC
  • V-ATPase subunit F
    • 4ix9 – yATP subunit F (mutant)
    • 2qai - ATPS subunit F – Pyrococcus furiosus
    • 2i4r - ATPS subunit F – Archaeoglobus fulgidus
    • 2ov6 - MmATPS subunit F - NMR
    • 2d00 - TtATPS subunit F
  • V-ATPase subunit G
    • 2k88 - yATPS subunit G residues 2-58 - NMR
    • 2kwy - yATPS subunit G residues 61-101 - NMR
  • V-ATPase subunit H
    • 1ho8 – yATPS subunit H
  • V-ATPase subunit K
    • 2bl2, 2cyd - EhATPS subunit K – Enterococcus hirae
  • V-ATPase subunit I
    • 3rrk – ATPS subunit I N terminal – Meiothermus ruber
    • V-ATPase multi subunits
    • 6wlw – hATPase – Cryo EM
    • 6wlz, 6wm2, 6wm3, 6wm4 – hATPase + ADP – Cryo EM
    • 6xbw, 6xby, 6zg7, 6zg8, 6zik, 6ziq, 6zit, 6ziu, 6zpo, 6zqm, 6zqn – bATPase – Cryo EM
    • 7khr – bATPase + antibiotics – Cryo EM
    • 6vq6, 6vq7, 6vq8 - raATPS subunit A,B,C,D,E,E2, F,G,K, S1 + effector + renin receptor – Cryo EM
    • 6vq9, 6vqa, 6vqb - raATPS subunit A,B,D,E,E2,G,H + effector – Cryo EM
    • 6vqc, 6vqg, 6vqh - raATPS subunit A,B,D,E2, F, S1 + renin receptor + RNase K – Cryo EM
    • 6vqi, 6vqj, 6vqk - raATPS subunit A,C1,E1,G – Cryo EM
    • 4dl0, 4efa - yATPase subunits C,G,E
    • 3w3a - yATPS subunit A,B,D,F
    • 5tj5 - yATPS subunit A,C,C’,C’’,D,E,F
    • 5voz, 5voy, 5vox - yATPS subunit A,C,C’,C’’,D,E,F,H – Cryo EM
    • 6c6l - yATPS subunit A,C,C’,C’’,D,E,F + V0 assembly protein 1
    • 6o7t, 6m0r, 6m0s - yATPS subunit A,C,C’,C’’,E + V0 assembly protein 1 – Cryo EM
    • 6o7u - yATPS subunit C,C’,C’’,D,E + V0 assembly protein 1 – Cryo EM
    • 6o7v, 6o7w, 6o7x - yATPS subunit A,B,C,C’,C’’,D,E,F,G,H + V0 assembly protein 1 – Cryo EM
    • 6pe4, 6pe5 - yATPS subunit A,C,C’,C’’,D,E + V0 assembly protein 1 + cation transporter – Cryo EM
    • 5bw9 - yATPS subunit A,B,D,E,G,H – Cryo EM
    • 5d80 - yATPS subunit A,B,D,E,F,G,H
    • 3a5c, 3a5d - TtATPS subunit A,B,D,F
    • 6ly8 - TtATPS subunit A,B,D,F + ADP - Cryo-EM
    • 6ly9 - TtATPS subunit C,E,I,K - Cryo-EM
    • 5tsj - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM
    • 5gas, 5gar - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM
    • 5y60. 5y5z, 5y5y, 5y5x, 6qum, 6r0w, 6r0y, 6r0z, 6r10 - TtATPS subunit A,B,C,D,E,F,I,K - Cryo-EM
    • 3gqb - TtATPS subunit A (mutant),B (mutant)
    • 3k5b - TtATPS subunit E (mutant)+C
    • 5zea - EhATPS subunit A,B (mutant)
    • 5ze9 - EhATPS subunit A,B (mutant) + AMPPNP
    • 5knd, 5knc, 5knb - EhATPS subunit A,B,D,F
  • P-ATPase
  • Cu+2 transporting ATPase
    • 2kmv, 2kmx, 2arf, 2koy – hATPase NBD – human – NMR
    • 2kij - hATPase actuator domain – NMR
    • 1yjr, 1yjt, 1yju, 1yjv - hATPase (mutant) 6th soluble domain – NMR
    • 1y3j, 1y3k - hATPase 5th soluble domain – NMR
    • 2ew9 - hATPase 5th+6th soluble domains – NMR
    • 1s6o, 1s6u, 2lqb - hATPase 2nd soluble domain – NMR
    • 1q8l - hATPase 2nd MBD – NMR
    • 1aw0, 2aw0 - hATPase 4th MBD – NMR
    • 1kvi, 1kvj - hATPase 1st MBD – NMR
    • 5t7l - hATPase 1st MBD + Cu transport protein
    • 2k1r - hATPase MBD+ ATOX1 – NMR
    • 2rop, 2g9o, 2ga7 - hATPase MBD – NMR
    • 1fvq, 1fvs - hATPase – NMR
    • 3cjk – hATPase + Cu transporting protein ATX1
    • 3dxs - AtATPase RAN1 MBD (mutant) – Arabidopsis thaliana
    • 5lbd – AtATPase PAA1 N-domain
    • 5lbk – AtATPase PAA2 N-domain
    • 3voy, 3j08, 3j09 - AfATPase – Archaeoglobus fulgidus – CryoEM
    • 3skx, 3sky - AfATPase NBD
    • 3a1c – AfATPase NBD + AMPPCP
    • 3a1d - AfATPase NBD + ADP-Mg
    • 3a1e - AfATPase NBD (mutant) + AMPPCP
    • 2rml - BsATPase N-terminal – Bacillus subtilis – NMR
    • 2gcf - syATPase N-terminal - Synechocystis – NMR
    • 4a4j - syATPase N-terminal
    • 4a48 - syATPase
    • 2iye - SsATPase catalytic domain – Sulfolobus solfataricus
    • 2yj3 - SsATPase catalytic domain (mutant)
    • 2yj4, 2yj5, 2yj6 - SsATPase catalytic domain (mutant) + nucleotide
    • 3rfu, 4bbj, 4bev, 4byg – LpATPase – Legionella pneumophila
    • 4f2f - ATPase metal-binding domain – Streptococcus pneumonia
  • Na/K transporting ATPase
  • Ca+2 transporting ATPase
  • Zn+2 transporting ATPase
    • 2ofg, 2ofh - sATPase N-terminal – NMR
    • 4umw, 4umv - ATPase +Mg – Shigella sonni
  • K+ transporting ATPase
  • As+ transporting ATPase
    • 3h84, 3idq, 3a36, 3a37 - yATPase GET3
    • 4pwx, 5bwk - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein
    • 5bw8 - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein
    • 4xwo - yATPase GET3 + antibody + Sec22
    • 4xvu - yATPase GET3 + antibody + NYV1
    • 4xtr - yATPase GET3 + antibody + pep12p
    • 3sja, 3sjb, 3sjc, 3sjd, 3zs8, 3zs9, 3b2e, 3vlc - yATPase GET3 + GET1 cystolic domain
    • 1ii0, 1f48, 1ii9 - EcATPase
    • 1ihu – EcATPase+Mg+ADP+AlF3
    • 3ibg - ATPase GET3 – Aspergillus fumigatus
  • H+ transporting ATPase
    • 5ksd - AtATPase C terminal truncated
    • 1mhs - ATPase – Neurospora crassa
  • Na+ transporting ATPase
    • 2db4, 3aou - EhATPase subunit K
    • 3aon - EhATPase subunits D,G
    • 3vr2 - EhATPase subunits A,B
    • 3vr4, 3vr5 - EhATPase subunits A,B,D,G
    • 3vr3 - EhATPase subunits A,B + AMPPNP
    • 3vr6 - EhATPase subunits A,B,D,G + AMPPNP
    • 1yce - ATPase rotor ring – Ilyobacter tartaricus
  • H/K transporting ATPase
  • Mg+2 transporting ATPase
    • 3gwi – EcATPase P-1 NBD
  • Arg/ornithine transporting ATPase
    • 1h8e – bATPase+ADP+AlF4+ADP+SO4
    • 1h8h -bcATPase+ AMPPNP
    • 1efr - bATPase+efrapeptin
    • 3cf0, 3cf1, 3cf3 – mATPase NBD+ADP – mouse
    • 3cf2 - mATPase NBD+ADP+AMP-PNP
    • 1kmh - sATPase alpha subunit+tentoxin
    • 3fks – yATPase
    • 3ea0 – ATPase ParA, fragment – Chlorobium tepidum
    • 2qen – ATPase (mutant) Walker-type – Pyrococcus abyssi
    • 2r31, 2p4x – PdATPase ATP12
    • 2zd2 – PdATPase (mutant) ATP12
    • 1d8s – EcATPase F1
    • 1vdz – PhATPase subunit A – Pyrococcus horikoshii
    • 3md0 – MtATPase+GDP
  • Monosaccharide transporting ATPase
    • 5dte – AsATPase – Actinobacillus succinogenes
    • 4zjp – AsATPase + ribopyranose
  • Phospholipid transporting ATPase
    • 6k7g, 6k7h, 6k7i, 6k7j, 6k7k, 6k7l, 6k7m, 6k7n – hATPase + cell cycle control protein – Cryo EM
    • 7lkp – hATPase – Cryo EM
    • 6lkn – hATPase (mutant) + cell cycle control protein
    • 7ky5, 7ky6, 7ky7, 7kya, 7kyc – yATPase + LEM3 – Cryo EM
    • 7ky9, 7kyb – yATPase + LEM3 + ADP – Cryo EM
    • 7ky8 – yATPase + LEM3 + AMPPCP – Cryo EM
    • 6lcp, 6lcr – ATPase + cell cycle control protein – Chaetomium thermophilum - Cryo EM
  • RNA-dependent ATPase
    • 3eaq, 3i31, 3i32 – TtATPase fragment
    • 4kbg, 4kbf - TtATPase helicase core domain
    • 5mao - TtATPase RRM domain
    • 4i69, 4i68 - TtATPase RRM domain (mutant)
    • 4i67 - TtATPase RRM domain + RNA
    • 3mwj – TtATPase N-terminal (mutant)
    • 3mwk, 3nbf – TtATPase N-terminal + 8-oxo-AMP
    • 3mwl - TtATPase N-terminal (mutant) + 8-oxoadenine
    • 3nej - TtATPase reca-like domain (mutant)
  • DNA-dependent ATPase
    • 5tnu - ATPase – Sulfolobus tokodaii
    • 6p4o, 6p4w - ATPase + endonuclease BAX1 – Sulfurisphaera tokodaii
  • Proteasome-associated ATPase
    • 3fp9, 3m9b, 3m9h – MtATPase intern domain
    • 3m91, 3m9d - MtATPase coiled coil domain + protein PUP
    • 5kzf – MtATPase residues 98-609
    • 5kwa – MtATPase residues 22-529
    • 6kww – ATPase subunit HsIU – Staphylococcus aureus
    • 5txv – EcATPase subunit HslU
    • 6pxk, [[[6pxl|6pxl]], 6pxx – EcATPase subunit HsIU + ADP
    • 5ji3, 5ji2 – EcATPase subunits HslU+HslV
    • 6pxi – EcATPase subunit HsIU+HsIV + ADP
    • 2wfw – ATPase substrate recognition domain – Rhodococcus erythropolis
  • Transitional endoplasmic reticulum ATPase residues 1-806
  • Transitional endoplasmic reticulum ATPase residues 1-480
    • 3hu1, 3hu2, 3hu3 – hTer-ATPase + ATPGS
    • 4ko8, 4kln, 5dyg – hTer-ATPase (mutant) + ATPGS
    • 5dyi – hTer-ATPase + ADP
    • 4kod – hTer-ATPase (mutant) + ADP
    • 5kiy, 5kiw - hTer-ATPase (mutant) + Selenoprotein S
  • Transitional endoplasmic reticulum ATPase residues 1-200
    • 3qc8, 3qq8, 3qwz - hTer-ATPase + FAS-associated factor 1
    • 3qq7 - hTer-ATPase
    • 3tiw - hTer-ATPase + E3 ubiquitin-protein ligase peptide
    • 5glf - hTer-ATPase + derlin-1 peptide
    • 5epp - hTer-ATPase N + rhomboid-related protein 4 peptide
    • 4kdl, 4kdi - hTer-ATPase + ubiquitin thioesterase OTU1
    • 5b6c - hTer-ATPase + ubiquitin fusion degradation protein
    • 5x4l - hTer-ATPase + UBX domain-containing protein
    • 1s3s - mTer-ATPase ND1 domain + P47 C terminal
    • 4rv0 - Ter-ATPase N terminal + nuclear protein localization protein – Drosophila melanogaster
  • Sarcoplasmic/endoplasmic reticulum ATPase
  • LAO/AO transport system ATPase
    • 3nxs – MsATPase + GDP
    • 6cum – MsATPase
  • DNA double-strand repair ATPase (Rad50)
    • 3aux – MjRad50 – Methanocaldococcus jannaschii
    • 3auy - MjRad50 + ADP
    • 3av0 - MjRad50 + ATP
    • 5f3w - MjRad50 + MRE11 + ATPGS
    • 5dny - MjRad50 + MRE11 + DNA
    • 3qg5 – TmRad50 NBD + MRE11
    • 3qkr, 3qks, 3qf7 - PfRad50 NBD + MRE11 – Pyrococcus furiosus
    • 4nck, 4nci, 4nch - PfRad50 NBD (mutant)
    • 4ncj - PfRad50 NBD (mutant) + BeF3 + ADP
    • 3qkt - PfRad50 NBD + AMPPNP
    • 3qku - PfRad50 NBD + AMPPNP + MRE11
  • MipZ ATPase
    • 2xit, 2xj4 – CcMipZ – Caulobacter crescentus
    • 2xj9 – CcMipZ (mutant)
  • ATPase Rava
    • 5fl2, 4upf – EcATPase LARA domain + lysine decarboxylase
    • 4upb, 6q7l, 6q7m – EcATPase + lysine decarboxylase – Cryo EM
    • 3nbx – EcATPase Rava + ADP
    • 6sza, 6szb – EcATPase Rava + ADP – Cryo EM
  • FlaI ATPase
    • 4ihq, 4ii7 – ATPase (mutant) – Sulfolobus acidocaldarius
  • Vescicle-fusing ATPase
    • 6mdm, 6mdn – haATPase + SNAP-25 + syntaxin-1A + VAMP-2 + NSF attachment protein – hamster – Cryo EM
    • 6mdo, 6mdp – haATPase + SNAP-25 – Cryo EM
  • ATPase Invc
    • 6sdx – ATPase – Salmonella enterica
  • ATPase in ribosome
    • 6tmf – ATPase – Thermococcus celer
  • P5A-type ATPase
  • ATPase SpaL/MxiB

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Michal Harel, Joel L. Sussman, Openfox