4zdt

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Crystal structure of the RING finger domain of Slx1 in complex with the C-terminal domain of Slx4

Structural highlights

4zdt is a 4 chain structure with sequence from Schizosaccharomyces pombe 972h-. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:GOL, SO4, ZN
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SLX1_SCHPO Catalytic subunit of the slx1-slx4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for stem-loop (SL) and splayed arm Y structures. Introduces a single-strand cut in duplex DNA on the 3' side of a double-strand/single-strand junction with respect to the single-strand moving 3' to 5' away from the junction. Plays a critical role in maintaining the integrity of the ribosomal DNA (rDNA) loci, where it has a role in re-starting stalled replication forks. The complex initiates homologous recombination (HR) events, used to maintain rDNA copy number, in the rDNA repeats that are processed by a mechanism that requires rad22, but not rhp51. It is also required for suppression of methyl methanesulfonate (MMS) and UV-C irradiation hypersensitivity of the structural maintenance of chromosome (SMC) protein mutant, smc6-74, by overexpression of brc1. Has Holliday junction resolvase activity in vitro.[HAMAP-Rule:MF_03100][1] [2] [3] [4] [5]

See Also

References

  1. ↑ Coulon S, Gaillard PH, Chahwan C, McDonald WH, Yates JR 3rd, Russell P. Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast. Mol Biol Cell. 2004 Jan;15(1):71-80. Epub 2003 Oct 3. PMID:14528010 doi:http://dx.doi.org/10.1091/mbc.E03-08-0586
  2. ↑ Sheedy DM, Dimitrova D, Rankin JK, Bass KL, Lee KM, Tapia-Alveal C, Harvey SH, Murray JM, O'Connell MJ. Brc1-mediated DNA repair and damage tolerance. Genetics. 2005 Oct;171(2):457-68. Epub 2005 Jun 21. PMID:15972456 doi:http://dx.doi.org/10.1534/genetics.105.044966
  3. ↑ Coulon S, Noguchi E, Noguchi C, Du LL, Nakamura TM, Russell P. Rad22Rad52-dependent repair of ribosomal DNA repeats cleaved by Slx1-Slx4 endonuclease. Mol Biol Cell. 2006 Apr;17(4):2081-90. Epub 2006 Feb 8. PMID:16467377 doi:http://dx.doi.org/E05-11-1006
  4. ↑ Lee KM, Nizza S, Hayes T, Bass KL, Irmisch A, Murray JM, O'Connell MJ. Brc1-mediated rescue of Smc5/6 deficiency: requirement for multiple nucleases and a novel Rad18 function. Genetics. 2007 Apr;175(4):1585-95. Epub 2007 Feb 4. PMID:17277362 doi:http://dx.doi.org/10.1534/genetics.106.067801
  5. ↑ Fekairi S, Scaglione S, Chahwan C, Taylor ER, Tissier A, Coulon S, Dong MQ, Ruse C, Yates JR 3rd, Russell P, Fuchs RP, McGowan CH, Gaillard PH. Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases. Cell. 2009 Jul 10;138(1):78-89. PMID:19596236 doi:S0092-8674(09)00776-4

Contents


PDB ID 4zdt

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