5ybb

From Proteopedia

Jump to: navigation, search

Structural basis underlying complex assembly andconformational transition of the type I R-M system

Structural highlights

5ybb is a 8 chain structure with sequence from Caldanaerobacter subterraneus subsp. tengcongensis MB4 and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.2Å
Ligands:SAM
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q8R9Q4_CALS4

Publication Abstract from PubMed

Type I restriction-modification (R-M) systems are multisubunit enzymes with separate DNA-recognition (S), methylation (M), and restriction (R) subunits. Despite extensive studies spanning five decades, the detailed molecular mechanisms underlying subunit assembly and conformational transition are still unclear due to the lack of high-resolution structural information. Here, we report the atomic structure of a type I MTase complex (2M+1S) bound to DNA and cofactor S-adenosyl methionine in the "open" form. The intermolecular interactions between M and S subunits are mediated by a four-helix bundle motif, which also determines the specificity of the interaction. Structural comparison between open and previously reported low-resolution "closed" structures identifies the huge conformational changes within the MTase complex. Furthermore, biochemical results show that R subunits prefer to load onto the closed form MTase. Based on our results, we proposed an updated model for the complex assembly. The work reported here provides guidelines for future applications in molecular biology.

Structural basis underlying complex assembly and conformational transition of the type I R-M system.,Liu YP, Tang Q, Zhang JZ, Tian LF, Gao P, Yan XX Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11151-11156. doi:, 10.1073/pnas.1711754114. Epub 2017 Oct 2. PMID:28973912[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

Loading citation details..
Citations
reviews cite this structure
No citations found

See Also

References

  1. Liu YP, Tang Q, Zhang JZ, Tian LF, Gao P, Yan XX. Structural basis underlying complex assembly and conformational transition of the type I R-M system. Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11151-11156. doi:, 10.1073/pnas.1711754114. Epub 2017 Oct 2. PMID:28973912 doi:http://dx.doi.org/10.1073/pnas.1711754114

Contents


PDB ID 5ybb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools