6f6i

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CRYSTAL STRUCTURE OF EBOLAVIRUS GLYCOPROTEIN IN COMPLEX WITH PAROXETINE

Structural highlights

6f6i is a 2 chain structure with sequence from Ebov and Zebov. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:8PR, BMA, DMS, GOL, MAN, NAG
NonStd Res:UNK
Gene:GP, DH33_45402gpGP (ZEBOV), GP, DF49_53415gpGP, DF49_53416gpGP, DF49_53417gpGP, DF49_53418gpGP, DF49_53419gpGP, DF49_53420gpGP, DF49_53421gpGP, DF49_53422gpGP, DF49_53423gpGP, DF49_53424gpGP, DF49_53425gpGP, DF49_53426gpGP (EBOV)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Here we show that four chemically divergent approved drugs reported to inhibit Ebolavirus infection, benztropine, bepridil, paroxetine and sertraline, directly interact with the Ebolavirus glycoprotein. Binding of these drugs destabilise the protein, suggesting that this may be the mechanism of inhibition, as reported for the anticancer drug toremifene and the painkiller ibuprofen, which bind in the same large cavity on the glycoprotein. Crystal structures show that the position of binding and the mode of interaction within the pocket vary significantly between these compounds. The binding constants (Kd) determined by thermal shift assay correlate with the protein-inhibitor interactions as well as with the antiviral activities determined by virus cell entry assays, supporting the hypothesis that these drugs inhibit viral entry by binding the glycoprotein and destabilising the pre-fusion conformation. Details of the protein-inhibitor interactions of these complexes and their relation with binding affinity may facilitate the design of more potent inhibitors.

Target identification and mode of action of four chemically divergent drugs against Ebola virus infection.,Ren J, Zhao Y, Fry EE, Stuart DI J Med Chem. 2017 Dec 22. doi: 10.1021/acs.jmedchem.7b01249. PMID:29272110[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Ren J, Zhao Y, Fry EE, Stuart DI. Target identification and mode of action of four chemically divergent drugs against Ebola virus infection. J Med Chem. 2017 Dec 22. doi: 10.1021/acs.jmedchem.7b01249. PMID:29272110 doi:http://dx.doi.org/10.1021/acs.jmedchem.7b01249

Contents


6f6i, resolution 2.40Å

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