6h07

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X-ray structure of Lactobacillus brevis alcohol dehydrogenase

Structural highlights

6h07 is a 2 chain structure with sequence from "bacillus_casei_g"_von_freudenreich_and_thoni_1904 "bacillus casei g" von freudenreich and thoni 1904. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:MG, MN
Gene:radh ("Bacillus casei g" von Freudenreich and Thoni 1904)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Lactobacillus brevis alcohol dehydrogenase (LbADH) is a well studied homotetrameric enzyme which catalyzes the enantioselective reduction of prochiral ketones to the corresponding secondary alcohols. LbADH is stable and enzymatically active at elevated temperatures and accepts a broad range of substrates, making it a valuable tool in industrial biocatalysis. Here, the expression, purification and crystallization of LbADH to generate large, single crystals with a volume of up to 1 mm(3) suitable for neutron diffraction studies are described. Neutron diffraction data were collected from an H/D-exchanged LbADH crystal using the BIODIFF instrument at the Heinz Maier-Leibnitz Zentrum (MLZ), Garching, Germany to a resolution dmin of 2.15 A in 16 days. This allowed the first neutron crystal structure of LbADH to be determined. The neutron structure revealed new details of the hydrogen-bonding network originating from the ion-binding site of LbADH and provided new insights into the reasons why divalent magnesium (Mg(2+)) or manganese (Mn(2+)) ions are necessary for its activity. X-ray diffraction data were obtained from the same crystal at the European Synchrotron Radiation Facility (ESRF), Grenoble, France to a resolution dmin of 1.48 A. The high-resolution X-ray structure suggested partial occupancy of Mn(2+) and Mg(2+) at the ion-binding site. This is supported by the different binding affinity of Mn(2+) and Mg(2+) to the tetrameric structure calculated via free-energy molecular-dynamics simulations.

Neutron and X-ray crystal structures of Lactobacillus brevis alcohol dehydrogenase reveal new insights into hydrogen-bonding pathways.,Hermann J, Nowotny P, Schrader TE, Biggel P, Hekmat D, Weuster-Botz D Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):754-764. doi:, 10.1107/S2053230X18015273. Epub 2018 Nov 26. PMID:30511668[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Hermann J, Nowotny P, Schrader TE, Biggel P, Hekmat D, Weuster-Botz D. Neutron and X-ray crystal structures of Lactobacillus brevis alcohol dehydrogenase reveal new insights into hydrogen-bonding pathways. Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):754-764. doi:, 10.1107/S2053230X18015273. Epub 2018 Nov 26. PMID:30511668 doi:http://dx.doi.org/10.1107/S2053230X18015273

Contents


PDB ID 6h07

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