6rcn

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Crystal structure of REXO2-D199A-dAdA

Structural highlights

6rcn is a 3 chain structure with sequence from Human. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:MG, ZN
Gene:REXO2, SFN, SMFN, CGI-114 (HUMAN)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[ORN_HUMAN] 3'-to-5' exoribonuclease specific for small oligoribonucleotides. Active on small (primarily </=5 nucleotides in length) single-stranded RNA and DNA oligomers. May have a role in cellular nucleotide recycling.[1]

Publication Abstract from PubMed

Oligoribonucleases are conserved enzymes that degrade short RNA molecules of up to 5 nt in length and are assumed to constitute the final stage of RNA turnover. Here we demonstrate that REXO2 is a specialized dinucleotide-degrading enzyme that shows no preference between RNA and DNA dinucleotide substrates. A heart- and skeletal-muscle-specific knockout mouse displays elevated dinucleotide levels and alterations in gene expression patterns indicative of aberrant dinucleotide-primed transcription initiation. We find that dinucleotides act as potent stimulators of mitochondrial transcription initiation in vitro. Our data demonstrate that increased levels of dinucleotides can be used to initiate transcription, leading to an increase in transcription levels from both mitochondrial promoters and other, nonspecific sequence elements in mitochondrial DNA. Efficient RNA turnover by REXO2 is thus required to maintain promoter specificity and proper regulation of transcription in mammalian mitochondria.

Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.,Nicholls TJ, Spahr H, Jiang S, Siira SJ, Koolmeister C, Sharma S, Kauppila JHK, Jiang M, Kaever V, Rackham O, Chabes A, Falkenberg M, Filipovska A, Larsson NG, Gustafsson CM Mol Cell. 2019 Sep 27. pii: S1097-2765(19)30695-1. doi:, 10.1016/j.molcel.2019.09.010. PMID:31588022[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Bruni F, Gramegna P, Oliveira JM, Lightowlers RN, Chrzanowska-Lightowlers ZM. REXO2 is an oligoribonuclease active in human mitochondria. PLoS One. 2013 May 31;8(5):e64670. doi: 10.1371/journal.pone.0064670. Print 2013. PMID:23741365 doi:http://dx.doi.org/10.1371/journal.pone.0064670
  2. Nicholls TJ, Spahr H, Jiang S, Siira SJ, Koolmeister C, Sharma S, Kauppila JHK, Jiang M, Kaever V, Rackham O, Chabes A, Falkenberg M, Filipovska A, Larsson NG, Gustafsson CM. Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol Cell. 2019 Sep 27. pii: S1097-2765(19)30695-1. doi:, 10.1016/j.molcel.2019.09.010. PMID:31588022 doi:http://dx.doi.org/10.1016/j.molcel.2019.09.010

Contents


PDB ID 6rcn

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