6y2h

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The crystal structure of human chloride intracellular channel protein 5

Structural highlights

6y2h is a 4 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.154Å
Ligands:SCN
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

CLIC5_HUMAN Autosomal recessive non-syndromic sensorineural deafness type DFNB. The disease is caused by mutations affecting the gene represented in this entry.

Function

CLIC5_HUMAN Required for normal hearing (PubMed:24781754). It is necessary for the formation of stereocilia in the inner ear and normal development of the organ of Corti (By similarity). Can insert into membranes and form poorly selective ion channels that may also transport chloride ions. May play a role in the regulation of transepithelial ion absorption and secretion. Is required for the development and/or maintenance of the proper glomerular endothelial cell and podocyte architecture (PubMed:15184393, PubMed:18028448, PubMed:20335315). Plays a role in formation of the lens suture in the eye, which is important for normal optical properties of the lens (By similarity).[UniProtKB:Q8BXK9][1] [2] [3] [4]

Publication Abstract from PubMed

The human chloride intracellular channel (hCLIC) family is thought to transition between globular and membrane-associated forms by exposure of a hydrophobic surface. However, the molecular identity of this surface, and the triggering events leading to its exposure, remain elusive. Here, by combining biochemical and structural approaches, together with mass spectrometry (MS) analyses, we show that hCLIC5 is inherently flexible. X-ray crystallography revealed the existence of a globular conformation, while small-angle X-ray scattering showed additional elongated forms consisting of exposure of the conserved hydrophobic inter-domain interface to the bulk phase. Tryptophan fluorescence measurements demonstrated that the transition to the membrane-associated form is enhanced by the presence of oxidative environment and lipids. Using MS, we identified a dose-dependent oxidation of a highly conserved cysteine residue, known to play a key role in the structurally related omega-class of glutathione-S-transferases. Hydrogen/deuterium exchange MS analysis revealed that oxidation of this cysteine facilitates the exposure of the conserved hydrophobic inter-domain interface. Together, our results pinpoint an oxidation of a specific cysteine residue as a triggering mechanism initializing the molecular commitment for membrane interaction in the CLIC family.

Conserved cysteine dioxidation enhances membrane interaction of human Cl(-) intracellular channel 5.,Ferofontov A, Vankova P, Man P, Giladi M, Haitin Y FASEB J. 2020 Jun 17. doi: 10.1096/fj.202000399R. PMID:32725932[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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See Also

References

  1. Berryman M, Bruno J, Price J, Edwards JC. CLIC-5A functions as a chloride channel in vitro and associates with the cortical actin cytoskeleton in vitro and in vivo. J Biol Chem. 2004 Aug 13;279(33):34794-801. doi: 10.1074/jbc.M402835200. Epub, 2004 Jun 7. PMID:15184393 doi:http://dx.doi.org/10.1074/jbc.M402835200
  2. Singh H, Cousin MA, Ashley RH. Functional reconstitution of mammalian 'chloride intracellular channels' CLIC1, CLIC4 and CLIC5 reveals differential regulation by cytoskeletal actin. FEBS J. 2007 Dec;274(24):6306-16. Epub 2007 Nov 19. PMID:18028448 doi:http://dx.doi.org/EJB6145
  3. Wegner B, Al-Momany A, Kulak SC, Kozlowski K, Obeidat M, Jahroudi N, Paes J, Berryman M, Ballermann BJ. CLIC5A, a component of the ezrin-podocalyxin complex in glomeruli, is a determinant of podocyte integrity. Am J Physiol Renal Physiol. 2010 Jun;298(6):F1492-503. doi:, 10.1152/ajprenal.00030.2010. Epub 2010 Mar 24. PMID:20335315 doi:http://dx.doi.org/10.1152/ajprenal.00030.2010
  4. Seco CZ, Oonk AM, Dominguez-Ruiz M, Draaisma JM, Gandia M, Oostrik J, Neveling K, Kunst HP, Hoefsloot LH, del Castillo I, Pennings RJ, Kremer H, Admiraal RJ, Schraders M. Progressive hearing loss and vestibular dysfunction caused by a homozygous nonsense mutation in CLIC5. Eur J Hum Genet. 2015 Feb;23(2):189-94. doi: 10.1038/ejhg.2014.83. Epub 2014 Apr , 30. PMID:24781754 doi:http://dx.doi.org/10.1038/ejhg.2014.83
  5. Ferofontov A, Vankova P, Man P, Giladi M, Haitin Y. Conserved cysteine dioxidation enhances membrane interaction of human Cl(-) intracellular channel 5. FASEB J. 2020 Jun 17. doi: 10.1096/fj.202000399R. PMID:32725932 doi:http://dx.doi.org/10.1096/fj.202000399R

Contents


PDB ID 6y2h

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