Structural highlights
7jk9 is a 40 chain structure with sequence from Arath. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
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| Ligands: | , , |
| Gene: | PORB, At4g27440, F27G19.40 (ARATH) |
| Activity: | Protochlorophyllide reductase, with EC number 1.3.1.33 |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
[PORB_ARATH] Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).[1] [2]
Publication Abstract from PubMed
Chlorophyll biosynthesis, crucial to life on Earth, is tightly regulated because its precursors are phototoxic(1). In flowering plants, the enzyme light-dependent protochlorophyllide oxidoreductase (LPOR) captures photons to catalyse the penultimate reaction: the reduction of a double bond within protochlorophyllide (Pchlide) to generate chlorophyllide (Chlide)(2,3). In darkness, LPOR oligomerizes to facilitate photon energy transfer and catalysis(4,5). However, the complete three-dimensional structure of LPOR, the higher-order architecture of LPOR oligomers and the implications of these self-assembled states for catalysis, including how LPOR positions Pchlide and the co-factor NADPH, remain unknown. Here, we report the atomic structure of LPOR assemblies by electron cryo-microscopy. LPOR polymerizes with its substrates into helical filaments around constricted lipid bilayer tubes. Portions of LPOR and Pchlide insert into the outer membrane leaflet, targeting the product, Chlide, to the membrane for the final reaction site of chlorophyll biosynthesis. In addition to its crucial photocatalytic role, we show that in darkness LPOR filaments directly shape membranes into high-curvature tubules with the spectral properties of the prolamellar body, whose light-triggered disassembly provides lipids for thylakoid assembly. Moreover, our structure of the catalytic site challenges previously proposed reaction mechanisms(6). Together, our results reveal a new and unexpected synergy between photosynthetic membrane biogenesis and chlorophyll synthesis in plants, orchestrated by LPOR.
Photocatalytic LPOR forms helical lattices that shape membranes for chlorophyll synthesis.,Nguyen HC, Melo AA, Kruk J, Frost A, Gabruk M Nat Plants. 2021 Apr;7(4):437-444. doi: 10.1038/s41477-021-00885-2. Epub 2021 Apr, 19. PMID:33875834[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Su Q, Frick G, Armstrong G, Apel K. POR C of Arabidopsis thaliana: a third light- and NADPH-dependent protochlorophyllide oxidoreductase that is differentially regulated by light. Plant Mol Biol. 2001 Dec;47(6):805-13. doi: 10.1023/a:1013699721301. PMID:11785941 doi:http://dx.doi.org/10.1023/a:1013699721301
- ↑ Frick G, Su Q, Apel K, Armstrong GA. An Arabidopsis porB porC double mutant lacking light-dependent NADPH:protochlorophyllide oxidoreductases B and C is highly chlorophyll-deficient and developmentally arrested. Plant J. 2003 Jul;35(2):141-53. doi: 10.1046/j.1365-313x.2003.01798.x. PMID:12848821 doi:http://dx.doi.org/10.1046/j.1365-313x.2003.01798.x
- ↑ Nguyen HC, Melo AA, Kruk J, Frost A, Gabruk M. Photocatalytic LPOR forms helical lattices that shape membranes for chlorophyll synthesis. Nat Plants. 2021 Apr;7(4):437-444. doi: 10.1038/s41477-021-00885-2. Epub 2021 Apr, 19. PMID:33875834 doi:http://dx.doi.org/10.1038/s41477-021-00885-2