7rm6

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Horse liver alcohol dehydrogenase in complex with NADH and N-cylcohexyl formamide

Structural highlights

7rm6 is a 2 chain structure with sequence from Equus caballus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.43Å
Ligands:CXF, NAI, ZN
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

ADH1E_HORSE

Publication Abstract from PubMed

The catalytic power of an electric field depends on its magnitude and orientation with respect to the reactive chemical species. Understanding and designing new catalysts for electrostatic catalysis thus requires methods to measure the electric field orientation and magnitude at the molecular scale. We demonstrate that electric field orientations can be extracted using a two-directional vibrational probe by exploiting the vibrational Stark effect of both the C=O and C-D stretches of a deuterated aldehyde. Combining spectroscopy with molecular dynamics and electronic structure partitioning methods, we demonstrate that, despite distinct polarities, solvents act similarly in their preference for electrostatically stabilizing large bond dipoles at the expense of destabilizing small ones. In contrast, we find that for an active-site aldehyde inhibitor of liver alcohol dehydrogenase, the electric field orientation deviates markedly from that found in solvents, which provides direct evidence for the fundamental difference between the electrostatic environment of solvents and that of a preorganized enzyme active site.

A two-directional vibrational probe reveals different electric field orientations in solution and an enzyme active site.,Zheng C, Mao Y, Kozuch J, Atsango AO, Ji Z, Markland TE, Boxer SG Nat Chem. 2022 Aug;14(8):891-897. doi: 10.1038/s41557-022-00937-w. Epub 2022 May , 5. PMID:35513508[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Zheng C, Mao Y, Kozuch J, Atsango AO, Ji Z, Markland TE, Boxer SG. A two-directional vibrational probe reveals different electric field orientations in solution and an enzyme active site. Nat Chem. 2022 Aug;14(8):891-897. doi: 10.1038/s41557-022-00937-w. Epub 2022 May , 5. PMID:35513508 doi:http://dx.doi.org/10.1038/s41557-022-00937-w

Contents


PDB ID 7rm6

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