8rqb

From Proteopedia

Cryo-EM structure of mouse heavy-chain apoferritin

Structural highlights

8rqb is a 24 chain structure with sequence from Mus musculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Electron Microscopy, Resolution 1.09Å
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FRIH_MOUSE Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney.^[1]

Publication Abstract from PubMed

Cryo-transmission electron microscopy (cryo-EM) of frozen hydrated specimens is an efficient method for the structural analysis of purified biological molecules. However, cryo-EM and cryo-electron tomography are limited by the low signal-to-noise ratio (SNR) of recorded images, making detection of smaller particles challenging. For dose-resilient samples often studied in the physical sciences, electron ptychography - a coherent diffractive imaging technique using 4D scanning transmission electron microscopy (4D-STEM) - has recently demonstrated excellent SNR and resolution down to tens of picometers for thin specimens imaged at room temperature. Here we apply 4D-STEM and ptychographic data analysis to frozen hydrated proteins, reaching sub-nanometer resolution 3D reconstructions. We employ low-dose cryo-EM with an aberration-corrected, convergent electron beam to collect 4D-STEM data for our reconstructions. The high frame rate of the electron detector allows us to record large datasets of electron diffraction patterns with substantial overlaps between the interaction volumes of adjacent scan positions, from which the scattering potentials of the samples are iteratively reconstructed. The reconstructed micrographs show strong SNR enabling the reconstruction of the structure of apoferritin protein at up to 5.8 A resolution. We also show structural analysis of the Phi92 capsid and sheath, tobacco mosaic virus, and bacteriorhodopsin at slightly lower resolutions.

Low-dose cryo-electron ptychography of proteins at sub-nanometer resolution.,Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H Nat Commun. 2024 Sep 14;15(1):8062. doi: 10.1038/s41467-024-52403-5. PMID:39277607^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Li JY, Paragas N, Ned RM, Qiu A, Viltard M, Leete T, Drexler IR, Chen X, Sanna-Cherchi S, Mohammed F, Williams D, Lin CS, Schmidt-Ott KM, Andrews NC, Barasch J. Scara5 is a ferritin receptor mediating non-transferrin iron delivery. Dev Cell. 2009 Jan;16(1):35-46. doi: 10.1016/j.devcel.2008.12.002. PMID:19154717 doi:http://dx.doi.org/10.1016/j.devcel.2008.12.002
↑ Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H. Low-dose cryo-electron ptychography of proteins at sub-nanometer resolution. Nat Commun. 2024 Sep 14;15(1):8062. PMID:39277607 doi:10.1038/s41467-024-52403-5