8spm

From Proteopedia

Jump to: navigation, search

Crystal structure of NikA in complex Ni-AMA

Structural highlights

8spm is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.15Å
Ligands:II1, NI
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A024L032_ECOLX

Publication Abstract from PubMed

Microbial Ni(2+) homeostasis underpins the virulence of several clinical pathogens. Ni(2+) is an essential cofactor in urease and [NiFe]-hydrogenases involved in colonization and persistence. Many microbes produce metallophores to sequester metals necessary for their metabolism and starve competing neighboring organisms. The fungal metallophore aspergillomarasmine A (AMA) shows narrow specificity for Zn(2+), Ni(2+), and Co(2+). Here, we show that this specificity allows AMA to block the uptake of Ni(2+) and attenuate bacterial Ni-dependent enzymes, offering a potential strategy for reducing virulence. Bacterial exposure to AMA perturbs H(2) metabolism, ureolysis, struvite crystallization, and biofilm formation and shows efficacy in a Galleria mellonella animal infection model. The inhibition of Ni-dependent enzymes was aided by Zn(2+,) which complexes with AMA and competes with the native nickelophore for the uptake of Ni(2+). Biochemical analyses demonstrated high-affinity binding of AMA-metal complexes to NikA, the periplasmic substrate-binding protein of the Ni(2+) uptake system. Structural examination of NikA in complex with Ni-AMA revealed that the coordination geometry of Ni-AMA mimics the native ligand, Ni-(L-His)(2), providing a structural basis for binding AMA-metal complexes. Structure-activity relationship studies of AMA identified regions of the molecule that improve NikA affinity and offer potential routes for further developing this compound as an anti-virulence agent.

Targeting bacterial nickel transport with aspergillomarasmine A suppresses virulence-associated Ni-dependent enzymes.,Sychantha D, Chen X, Koteva K, Prehna G, Wright GD Nat Commun. 2024 May 13;15(1):4036. doi: 10.1038/s41467-024-48232-1. PMID:38740750[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

Loading citation details..
Citations
0 reviews cite this structure
No citations found

References

  1. Sychantha D, Chen X, Koteva K, Prehna G, Wright GD. Targeting bacterial nickel transport with aspergillomarasmine A suppresses virulence-associated Ni-dependent enzymes. Nat Commun. 2024 May 13;15(1):4036. PMID:38740750 doi:10.1038/s41467-024-48232-1

Contents


PDB ID 8spm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools