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1. Sandbox dav 4 (1,378 bytes)
   12: ''ddddd'' deee dedee dede [[google.com/]]
2. Art:Cytochrome Wallpaper (391 bytes)
   3: ...tal ceilings that graced buidings a century ago. (Google "embossed metal ceilings" and look at the images!...
   6: ...nerated from [[1os6]] with the following [[Jmol]] command script: <br><pre>
3. FirstGlance in Jmol Literature Citations (31,234 bytes)
   12: ...ching full text using [https://scholar.google.com Google Scholar] (see [[#Coverage|Coverage]]), and all we...
   17: * [https://www.youtube.com/@ericmartz9100 FirstGlance YouTube Channel] [[Ima...
   25: <li>Seeing locations of [[Missing residues and incomplete sidechains|'''missing''' residues]], which a...
   38: ...' at [https://tinyurl.com/movingmolecules tinyurl.com/movingmolecules].</span>
   42: ==={{Font color|#ff8000|Education & Communication}}===
4. Sandbox Reserved 686 (5,437 bytes)
   9: ...rom ''Streptomyces avermitilis''. One of the most common ways Ivermectin is used, is to treat Onchocerc...
   11: ...ts with the glutamate-gated chloride channel to accomplish this.
   25: ...ogy International (2013): n. pag. Academic Search Complete. Web. 20 Apr. 2013.</small>
   27: ...maceutical Scientists Journal 10.1 (2007): 42-46. Google Scholar. Web. 24 Apr. 2013.</small>
   29: ...Med. Web. 23 Apr. 2013. <http://www.sciencedirect.com>.</small>
5. Sandbox2 Eric Martz (7,265 bytes)
   5: In ConSurf-DB, I suppose that no single compromise between too many and too few sequences wil...
   20: ... domain (residues 223-229) is clamped between the complementarity-determining region (CDR)-like loops o...
   35: ...I complexes that I found in the [[PDB]]. Sequence comparison of the alpha chain of MHC in the CD8-bindi...
   54: ...lass I molecules from diverse species. After that come non-MHC class I sequences, namely multiple seque...
   125: ...e list, namely "sp|P15979|HA1F_CHICK Class I histocompatibility antigen, F10 alp...". However, the next...
6. AlphaFold2 examples from CASP 14 (26,979 bytes)
   1: ...illustrated two examples of predictions from that competition.
   7: ...-folding-biology-and-bioinformatics/ CASP14: what Google DeepMind’s AlphaFold 2 really achieved, and wha...
   16: ...ups making predictions. Shortly after the CASP 14 competition (summer 2020), two X-ray crystal structur...
   18: ...t-red"><b>carboxy</b></span> '''ends of the chain come together''' to form two parallel beta strands of...
   23: ...fold was kindly confirmed by Liisa Holm, personal communication to [[User:Eric Martz|Eric Martz]], Febr...
7. Proteopedia:Problems (18,636 bytes)
   11: ...es) of the WikiMedia Search (as modified) vs. the Google search. [[User:Eric Martz|Eric Martz]] 19:20, 13 ...
   21: ...rch for "mhc". The page "Major histocompatibility complex class I" appears almost at the end of the 400...
   23: ...ching for "antigens" fails to find "Category:Histocompatibility_antigen", but searching for "antigen" f...
   51: ...Improve the ‘Search’ option that is above the Google one on side of every page? If someone searches 'r...
   59: ... other special characters [[https://www.w3schools.com/charsets/ref_utf_greek.asp]] like &amp;beta; for ...
8. Help:Searching (7,304 bytes)
   2: ... task, and the standard wiki search feature often comes up short, so we wanted to provide another optio...
   4: ... text matches, while doing the same search in the Google search box finds many. Words of 4 or more charact...
   23: ===Disadvantages of the Google search===
   24: ...hen searching using the Google search box because Google needs time to find and index new pages. Addition...
   26: ===Advantages of the Google search===
9. User:Paul Craig (780 bytes)
   1: ...nother program. You can find out more if you just Google SBEVSL.
10. Help:Teaching with Proteopedia (11,502 bytes)
    17: ... Such worksheets give '''focus''' and a finite '''completion goal''' to each student. In contrast, simp...
    46: ... presentation software ([http://slides.google.com Google Slides], [https://www.libreoffice.org/ Libre Offi...
    66: ...ent, so they are not readable by the public. If a completed Studio project has sufficient quality, it c...
    70: How to '''assess completion of this assignment'''? One method is to re...
    78: ...y majors, or graduate students may be assigned to complete a project in the form of a permanent Proteop...
11. Molecular modeling and visualization software (8,477 bytes)
    9: ...ench]]. Effective use of Jmol requires learning a command scripting language.
    10: ...atures of a macromolecule '''without learning any command scripting language'''. [[FirstGlance in Jmol|...
    11: *[[ChimeraX]] (free for non-commercial use only).
    12: *[[iCn3D]], a powerful menu and command driven package from the [https://www.ncbi.nlm...
    15: ...at [http://tinyurl.com/sculpting-proteins tinyurl.com/sculpting-proteins].
12. User:Nikhil Malvankar/MB&B 420a-720a 2019 (19,312 bytes)
    62: ... will be in the form of [http://slides.google.com Google Slides] emailed to emartz@microbio.umass.edu. You...
    80: [https://docs.google.com/presentation/d/1lS59hde5F6ur9VCBO1_eHwXbhQcUHByPP...
    96: ...red Protein|intrinsically unstructured]]'''. Both commonly exist in the same protein molecule.
    110: ...ned by empirical (experimental) methods. The most common methods for determining the 3D structure of a ...
    141: # '''Recommended:''' <span style="font-size:150%;">Atlas of ...
13. User:Matt Whelihan (7,592 bytes)
    9: ...one thing that all bioluminescent species have in common is that they all catalyze the reaction with an...
    13: Luciferases have become an invaluable tool in microbiology and biochemis...
    20: ...e of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN [http://www.rcsb.org/pdb/...
    22: ...nn/1'>Rossmann fold</scene> [http://images.google.com/imgres?imgurl=http://chem.csusb.edu/~dpedersn/C43...
    23: ...ubstrate binding. This closing of the active site combined with various hydrophobic residues seen packe...
14. Epitopes (4,726 bytes)
    1: ...raphy|crystal structure]] of the antibody:antigen complex, where the contacts are evident. There are se...
    19: ... It would also be very useful to have performance comparisons.
    21: ...ystal structure of an antibody:antigen complex, a common way to identify the epitope recognized by a pa...
    35: ...d ''PepSurf'' (with C++ source), licensed for non-commercial use by Tel-Aviv University. The methods ar...
15. Sandbox dav2 (8,904 bytes)
    1: Search information on Google
    2: [http://www.google.ca ]
    6: '''Hello and welcome to my new protein page!'''
    16: [http://www.google.ca ]
    32: | source = [http://highered.mcgraw-hill.com/olcweb/cgi/pluginpop.cgi?it=swf::640::480::/sites...
16. Membrane proteins (2,390 bytes)
    25: ...otein structures in bilayers, see [https://github.com/pstansfeld/MemProtMD/ here].
17. Proteopedia:Primer (13,876 bytes)
    12: ...igation area, remember the 'Help' link. It will become handy.
    14: ...s you to save a self-contained version of a page, complete with interactive 3D molecules and working gr...
    17: ... or words you enter. Let's call this bottom slot 'Google's search'.
    29: ...OOL##', but, of course, you will see the name you composed yourself.
    169: A more complete description is available on Proteopedia.org,...
18. PTEN (3,864 bytes)
    2: ...1d5r' size='350' side='right' caption='Human PTEN complex with tartaric acid (PDB entry [[1d5r]])' scen...
    5: ...images/nrc2037-f1.jpg&imgrefurl=http://www.nature.com/nrc/journal/v7/n1/fig_tab/nrc2037_F1.html&usg=__3...
19. Theoretical models (25,227 bytes)
    8: ... is important because when theoretical models are compared with empirical models, the theoretical model...
    13: ... models'', but are mentioned here for the sake of completeness. Empirical models, usually determined by...
    34: ...but the model may not have been completed, or the completed model may not yet have been deposited in th...
    51: ...d. Modelers predict the structures which are then compared with subsequently published structures. Begi...
    53: There have also been competitions to predict protein-protein docking inter...
20. Sandbox Reserved 690 (5,929 bytes)
    10: ... analog of TRPV1, which scientists then modify on computers to turn into TRPV1. As I do not have the so...
    23: ...unit, and many of the regulation sites and heat become active on the A subunit. As this is not the real...
    26: ...Active Sites]] which signals for the channel to become open. This opening allows the influx of cations ...
    40: ...m.nih.gov/pubmed/19562439]. Capsazepine acts as a competitive ihibitor to capsaicin, thereby binding on...
    48: ...els has been taken from http://www.benthamscience.com/open/topainj/articles/V003/SI0066TOPAINJ/68TOPAIN...

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