RNA polymerase

spinqualitylabelsall models Yeast RNA polymerase II elongation complex C complexed with DNA and RNA and Zn+2 (grey) and Mg+2 (green) ions 3m3y. Subunit B1 (grey), B2 (green), B3 (pink), B9 (wheat), B11 (rust), ABC1 (magenta), ABC2 (cyan), ABC3 (red), ABC4 (aqua), ABC5 (blue) (PDB code 3m3y). Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D RNA polymerase (RNAP, DNA primase, dnaG) catalyzes the addition of nucleotides to RNA during transcription. DNA-dependent RNA polymerase catalyzes the transcription of RNA from a DNA template. The DNA-dependent eukaryote RNAP are divided to RNAP I (or Pol I) which transcribes ribosomal RNA; RNAP II (or Pol II) transcribes DNA and most snRNA and microRNA; RNAP III (or Pol III) transcribes tRNA and 5S ribosomal RNA. DNA primase (DNAP) is RNAP which catalyzes the synthesis of the RNA primer which complements an ssDNA template and initiates DNA synthesis. dnaG is a bacterial primase. For DNA-dependent RNA polymerase see Molecular Playground/T7 RNAP Conformations User:Luis E Ramirez-Tapia/T7 RNA polymerase Molecular Playground/T7 RNA Polymerase (7 mer int). Molecular Playground/Human mtRNA pol. Beta-Prime Subunit of Bacterial RNA Polymerase Transcription and RNA Processing. RNA-dependent RNA polymerase catalyzes the replication of RNA from a RNA template. An example is the Influenza virus RNA polymerase which is composed of 3 subunits. Subunit PA is involved in cap-snatching. Subunit PB1 is involved in RNA synthesis. Subunit PB2 is involved in RNA replication and transcription. It is implicated in endonuclease cleavage of RNA primers. View of the nucleic acid (1qln; blue: nontemplate strand; cyan: template strand; red:RNA). See also RNA-directed RNA polymerase. For RNA-dependent RNA polymerase from Hepatitis C virus - NS5B - see NS5B. User:Michael Strong/H1N1/PB2 User:Michael Strong/H1N1/PB2/MSA User:Michael Strong/H1N1/PA User:Michael Strong/H1N1/PA/MSA Poly(A) RNA polymerase catalyzes the addition of long poly(A) tails to mRNA without a template.

3D Structures of RNA polymerase

Updated on 31-October-2017

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• Prokaryotic DNA-dependent RNAP
  • Molecular Playground/T7 RNAP Conformations – SsRNAP – Sulfolobus shibata
    
  • 1ryq - PfRNAP subunit ε’’ - Pyrococcus furiosus
    
  • Molecular Playground/T7 RNA Polymerase (7 mer int) – MjRNAP subunit RPB4, RPB7 - Methanocaldococcus jannaschii
    
  • Molecular Playground/Human mtRNA pol, Beta-Prime Subunit of Bacterial RNA Polymerase - TtRNAP subunits α,β,β’,ω − Thermus thermophilus
    
  • Transcription and RNA Processing - TtRNAP subunit α
    
  • 1qln– EcRNAP subunit β fragment – Escherichia coli
    
  • RNA-directed RNA polymerase - EcRNAP subunit β’
    
  • NS5B, 1coo - EcRNAP subunit α
    
  • 1bdf - EcRNAP subunit α (mutant)
    
  • 3lu0 - EcRNAP subunits α,β,β’,ω – Electron diffraction
    
  • 2krc - BsRNAP subunit δ N-terminal – Bacillus subtilis – NMR
    
  • 2ly7 - BsRNAP subunit β − NMR
    
  • 2m4k - BsRNAP subunit δ − NMR
    
  • 4nc7, 4nc8 - BsRNAP subunit δ
    
  • 2max - HpRNAP subunit α − Helicobacter pylori - NMR
    
  • 1qyp – RNAP II C terminal – Thermococcus celer – NMR
    
  • 3ef0, 3ef1 - SpRNAP II subunit α C terminal – Schizosaccharomyces pombe
    
  • 3h0g – SpRNAP II
    
  • 3ayh - SpRNAP III subunit Rpc8+Rpc9
    
  • 4kbj – RNAP β subunit – Mycobacterium tuberculosis
    
  • 4noi – RNAP α subunit – Campylobacter jejuni
    
  • 1hqm – TaRNAP subunits α,β,β’,ω − Thermus aquaticus
    
  • 2gho - TaRNAP subunits α,β,β’
    
  • 2auj, 2auk - TaRNAP subunit β’
    
  • 1xpp – RNAP subunit L – Thermoplasma acidophilum
    
  • 2waq, 2wb1, 4ayb – SsRNAP
    
  • 3e7h – RNAP subunit β – Vibrio cholera
    
  • 1ef4 – MtRNAP subunit RPB10 – Methanothermobacter thermautotrophicus
    
  • 1eik - MtRNAP subunit RPB5 – NMR
    
  • 4qiw – TkRNAP subunits a’’+d+e’+f+h+k+l+n+p – Thermococcus kodakarensis
    
  • 4qjf - TkRNAP subunits e’+f
    
  • 4qjv - TkRNAP subunits d+l
    
  • 3nff, 3nfg, 3nfh, 3nfi – RNAP I fragments (mutant) – Candida glabrata
    
• Prokaryotic DNA-dependent RNAP complex with DNA/RNA
  • 4v8s – SsRNAP + DNA
    
  • 3q22, 3q23, 3q24, 4ff1, 4ff2, 4ff3, 4ff4 – RNAP + DNA – Enterobacteria phage N4
    
  • 2o5i, 2o5j, 4gzy, 4gzz, 4xln, 4xlr - TtRNAP subunits α,β,β’,ω + DNA +RNA
    
  • 4wqs, 4xlp, 4xlq, 4xls, 5tjg - TtRNAP subunits α,β,β’,ω + DNA
    
  • 2ppb - TtRNAP subunits α,β,β’,ω + antibiotic + DNA + RNA + substrate analog
    
  • 4yg2, 4jk1, 4jk2, 4jkr, 4kmu - EcRNAP subunits α,β,β’,ω + RNA
    
  • 4kn4, 4kn7 - EcRNAP subunits α,β,β’,ω + RNA + antibiotic
    
• Prokaryotic DNA-dependent RNAP complex with protein
  • 3p8b – PfRNAP subunit ε’’ + transcription antitermination protein
    
  • 3qqc - PfRNAP subunits β, ε’’ + transcription antitermination protein
    
  • 3aoh, 3aoi - TtRNAP subunits α,β,β’,ω + DNA +RNA + GFH1
    
  • 2be5- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor
    
  • 2cw0, 5tmf - TtRNAP subunits α,β,β’,ω + σ factor
    
  • 3wod - TtRNAP subunits α,β,β’,ω + σ factor + GP39
    
  • 4mq9 - TtRNAP subunits α,β,β’,ω + σ factor + GE23077
    
  • 5tmc - TtRNAP subunits α,β,β’,ω + factor + protein
    
  • 4oin, 4oio - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA
    
  • 4oip - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + nucleotide
    
  • 4oiq, 4oir - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + antibiotic
    
  • 4g7h, 4g7o, 4g7z, 4q4z, 5d4d, 5d4e - TtRNAP subunits α,β,β’,ω + σ factor + DNA
    
  • 4q5s, 5d4c, 5e17, 5e18 - TtRNAP subunits α,β,β’,ω + σ factor + DNA + RNA
    
  • 5i2d - TtRNAP subunits α,β,β’,ω + factor + transcriptional regulator + DNA + RNA
    
  • 3dxj, 3eql - TtRNAP subunits α,β,β’,ω + σ factor + antibiotic
    
  • 4wqt - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor
    
  • 3mlq - TtRNAP subunit β + transcription-repair coupling factor
    
  • 3woe, 3wof - TtRNAP subunit β + GP39
    
  • 2lmc - EcRNAP subunit β + RNAP inhibitor
    
  • 3mmp - EcRNAP subunit β + EF-TU
    
  • 3t72 - EcRNAP subunit β + Pho box DNA + PhoB
    
  • 1lb2, 3n4m - EcRNAP subunit α + DNA + CAP
    
  • 1xs9 - EcRNAP subunit α + DNA + MARA
    
  • 5ciz - EcRNAP subunit α + DNA + CRP
    
  • 3n97 - EcRNAP subunit α C terminal + DNA + σ factor
    
  • 4ljz, 4lk1, 4mey, 4xsx, 4xsy, 4xsz, 4zh2, 4zh3 , 4zh4, 5byh, 5nwt, 5uag, 5uah, 5uaj, 5ual, 5uaq - EcRNAP subunits α,β,β’,ω + σ factor
    
  • 5nsr, 5nss - EcRNAP subunits α,β,β’,ω + sigma factor + DNA – Cryo EMbr />
  • 4yln, 4ylo, 4ylp, 5ipl, 5ipm, 5ipn - EcRNAP subunits α,β,β’,ω + RNAP sigma factor + DNA + RNA
    
  • 4mex - EcRNAP subunits α,β,β’,ω + σ factor + salinamide
    
  • 4lk0, 4llg, 4mex, 4yfk, 4yfn, 4yfx - EcRNAP subunits α,β,β’,ω + σ factor + RNAP inhibitor
    
  • 5uac - EcRNAP subunits α,β,β’,ω + sigma factor + rifampin
    
  • 3iyd - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA
    
  • 4s20 - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA
    
  • 5tbz - EcRNAP subunits α,β,β’ + NusG – Cryo EM
    
  • 5ms0 - EcRNAP subunits α,β,β’,ω + sigma factor + NusB + NusG + NusA + antitermination protein + DNA – Cryo EM
    
  • 3ihq, 1z3e, 3gfk - BsRNAP subunit α +regulatory protein SPX
  • 1l9u - TaRNAP subunits α,β,β’,ω + σ factor
    
  • 1l9z - TaRNAP subunits α,β,β’,ω + σ factor + DNA
    
  • 2jzb – RNAP subunit α + NUSA transcription elongation factor – Yersinia pseudotuberculosis
    
  • 3tbi - RNAP subunit β + GP33 – Enterobacteria phage T4
    
  • 3lpe- MjRNAP subunit ε’’ + transcription antitermination protein
    
• Prokaryotic DNA-dependent RNAP complex with small molecule
  • 1zyr, 2a68, 2a69, 2a6e, 2a6h - TtRNAP subunits α,β,β’,ω + antibiotic
    
  • 1i6v, 1ynj, 1ynn - TaRNAP subunits α,β,β’,ω + antibiotic
    
• Eukaryotic DNA-dependent RNAP I
  • 1a1d – yRNAP subunit RPB8 – yeast - NMR
    
  • 2rf4 - yRNAP I subunit RPA4
    
  • 5g5l, 5lmx, 5m3f, 5m3m, 5m5w, 5m5x, 5m5y, 5m64 – yRNAP I – Cryo EM
    
  • 5n5y, 5n5z, 5n60, 5oa1 – yRNAP I + RRN – Cryo EM
    
  • 5n61 – yRNAP I + RRN + DNA + RNA – Cryo EM
    
• Eukaryotic DNA-dependent RNAP II
  • 1qkl - hRNAP II subunit RPB6 - human
    
  • 2c35 - hRNAP II subunits RPB4 RPB7 (mutant) – NMR
    
  • 2f3i - hRNAP II subunits RPB8 RPB17 RPABC3 – NMR
    
  • 2ghq, 2ght - hRNAP II subunits RPB1 + hRNAP II C terminal
    
  • 2q5e, 3l0b, 3l0c - hRNAP II C terminal
    
  • 1nik, 1nt9, 1wcm, 2b8k, 3fki, 3qt1, 1i3q, 1i50, 1dzf, 5ip7, 5ip9, 5u5q – yRNAP II
    
  • 4x67, 4x6a, 4y52, 4y7n, 5c3e, 5c44, 5c4a, 5c4j, 5c4x – yRNAP II + DNA + RNA
    
  • 3j1n, 4v1n, 5fmf – yRNAP II – Cryo EM
    
  • 1y14 - yRNAP II subunits RPB4 RPB7
    
  • 5flm – bRNAP II + DNA + RNA - bovine
    
  • 5oik – bRNAP II + SPT4 + SPT5 + DNA + RNA
    
  • 3ef0, 3ef1 - fyRNAP II subunit  C terminal – fission yeast
    
  • 3h0g – fyRNAP II
    
  • 5u0s – fyRNAP II + mediator complex – Cryo EM
    
• Eukaryotic DNA-dependent RNAP III
  • 2xub, 2xv4 - hRNAP III subunits RPC3
    
  • 5afq - hRNAP III subunits RPC3 + RPC32B
    
  • 2dk8 – RNAP III RPC34 domain - mouse – NMR
    
  • 2dk5 – hRNAP III winged helix domain (mutant) – NMR
    
  • 2yu3 - hRNAP III winged helix domain
    
  • 2ckz, 5fj9, 5fja - yRNAP III
    
  • 5fj8- yRNAP III + DNA + RNA
    
  • 3ayh - fyRNAP III subunit Rpc8+Rpc9
    
• Eukaryotic DNA-dependent RNAP μ
  • 4lzd – hRNAP μ
    
  • 4lzg, 4m04, 4m0a, 5twp, 5twq, 5twr, 5tws. 5txx, 5txz, 5tyb, 5tyc, 5tyd, 5tye, 5tyf, 5tyg, 5tyu, 5tyv, 5tyw, 5tyx, 5tyy, 5tyz – hRNAP μ + DNA
    
• Eukaryotic DNA-dependent RNAP mitochondrial
  • 4boc – hRNAP + DNA
    
  • 3spa - hRNAP + polypeptide
    
• Eukaryotic DNA-dependent RNAP II complex with DNA/RNA
  • 4boc – hRNAP + DNA
    
  • 1i6h, 4a3i - yRNAP II + DNA
    
  • 4v1m - yRNAP II + DNA – Cryo EM
    
  • 1r9s, 2ja5, 2ja6, 2ja7, 2ja8, 2nvq, 2nvt, 2nvx, 2nvy, 2nvz, 3gtg, 3gtj, 3gtk, 3gtl, 3gtm, 3gto, 3gtp, 3gtq, 3hov, 3how, 3hox, 3hoy, 3hoz, 3po2, 3po3, 3m3y, 3m4o, 4a3g, 4a93, 4a3b, 4a3c, 4a3d, 4a3e, 4a3f, 4a3j, 4a3k, 4a3l, 4a3m - yRNAP II + RNA + DNA
    
  • 1y1w, 1y77, 2r7z, 2r92, 2r93, 3h3v, 3rzd, 3rzo, 3s15, 3s16, 3s17, 3s1m, 3s1n, 3s1q, 3s1r, 3s2d, 3s2h - yRNAP II + RNA
  • 2b63 - yRNAP II + nucleotide + RNA
    
  • 2e2i, 2e2j - yRNAP II + nucleotide + DNA
    
  • 2yu9, 3i4m, 3i4n - yRNAP II + nucleotide + DNA + RNA
    
  • 2vum - yRNAP II + inhibitor + DNA + RNA
    
• Eukaryotic DNA-dependent RNAP II complex with protein
  • 3o2q, 3o2s – hRNAP II subunit α C-terminal + symplekin
    
  • 3j0k, 5iy6, 5iy7, 5iy8, 5iy9, 5iya, 5iyb, 5iyc, 5iyd – hRNAP II + TFIIF – Cryo EM
    
  • 2lto - hRNAP II subunit RPB1 + Tudor domain containing protein 3
    
  • 1pqv, 1y1v, 4bbr, 4bbs - yRNAP II + TFIIS
    
  • 1y1y - yRNAP II + TFIIS + DNA +RNA
    
  • 1r5u, 3k7a, 3k1f - yRNAP II + TFIIB
    
  • 4v1o, 5fyw, 5fz5, 5sva - yRNAP II + DNA + TIIF + TBP + mediator – Cryo EM
    
  • 2l0i – yRNAP C-terminal + RTT103 – NMR
    
  • 4bxx, 4bxz, 4by1, 4by7 – yRNAP II + RNA + DNA + transcription factor Bye1
    
• Eukaryotic DNA-dependent RNAP complex with small molecule
  • 3pgl - hRNAP II C terminal + inhibitor
    
  • 3cqz, 1k83 - yRNAP II + inhibitor
    
  • 1twa, 1twc, 1twf, 1twg, 1twh - yRNAP II + nucleotide
    
• DNA primase
  • 4lik - hDNAP small subunit
    
  • 4lil - hDNAP small subunit + UTP
    
  • 3q36 – hDNAP large subunit
    
  • 4bpu - hDNAP small (mutant) + large subunit
    
  • 4bpw - hDNAP small (mutant) + large subunit + UTP
    
  • 4bpx - hDNAP small (mutant) + DNA polymerase α subunit
    
  • 4ehs – HpDNAP C terminal
    
  • 4lim - yDNAP small subunit
    
  • 3lgb - yDNAP large subunit
    
  • 3m1m – DNAP RNA polymerase domain – Sulfolobus islandicus
    
  • 1zt2, 2pa8, 2pmz, 3hkz - DNAP small + large subunit – Sulfolobus solfataricus
    
  • 2au3 – DNAP zinc-binding and RNA polymerase domains – Aquifex aeolicus
    
  • 1v33 - PhDNAP small subunit – Pyrocuccus horikoshii
    
  • 1v34 - PhDNAP small subunit + nucleotide
    
  • 1g71 - PfDNAP small subunit
    
  • 4e2k – SaDNAP – Staphylococcus aureus
    
  • 2lzn – SaDNAP C terminal – NMR
    
  • 4edg, 4edk, 4edr, 4edt, 4edv, 4ee1 – SaDNAP + nucleotide
• Bacterial primase
  • 2r6a, 2r6c - GsdnaG helicase binding domain + helicase – Geobacillus stearothermophilus
    
  • 4m4w - GsdnaG helicase binding domain + helicase + DnaI
    
  • 1d0q - GsDNAP zinc-binding domain
    
  • 1z8s - GsdnaG dnaB binding domain - NMR
    
  • 2haj - EcdnaG catalytic domain - NMR
    
  • 3b39 – EcdnaG catalytic domain + DNA
    
  • 1t3w – EcdnaG C-terminal
    
  • 1eqn, 1dd9, 1dde – EcdnaG catalytic core
    
• RNA polymerase from Bacteriophage T7
  • 1q57 – T7DNAP/helicase (mutant) – Enterobacteria phage T7
    
  • 1nui – T7DNAP/helicase primase fragment (mutant)
    
  • 1cr0 - T7DNAP/helicase helicase domain
    
  • 1cr1, 1cr2, 1cr4 - T7DNAP/helicase helicase domain + nucleotide
    
  • 4rnp – T7RNAP
    
  • 1aro – T7RNAP + T7 lysozyme
    
  • 1cez, 1h38, 1qln, 2pi4, 2pi5 - T7RNAP + DNA
    
  • 1msw, 1s0v, 1s76, 1s77, 3e2e, 3e3j - T7RNAP + DNA + RNA
    
• RNA-dependent RNAP
  • 3phu, 1khv, 1khw – HfRNAP L RNA-directed – Hemorrhagic fever virus
    
  • 2xwh, 2xxd, 2xhu,2xhw, 3i5k, 1c2p, 1csj, 1quv, 1yuy, 1yv2, 1yvx, 1yvz, 3gsz, 4aep, 4aex, 2wrm, 3mwv, 3mww – HvRNAP Ns5b domain – Hepatitis virus
    
  • 3vc8 - HvRNAP cytoplasmic domain C terminal
    
  • 3vcb, 4ry4, 4ry5, 4ry6, 4ry7 - HvRNAP cytoplasmic domain C terminal (mutant)
    
  • 2xym, 2xhv, 2xi2, 4e76, 4adp, 4obc, 4wt9 - HvRNAP Ns5b domain (mutant)
    
  • 1rdr - PoRNAP – Polio virus
    
  • 1tql, 2ijd, 2ijf, 4nlo, 4nlp, 4nlq, 4nlr, 4nls, 4nlt, 4nlu, 4nlv, 4nlw, 4nlx, 4nly, 4r0e - PoRNAP (mutant)
    
  • 2xi5, 2xi7 – BvRNAP L N-terminal – Bunyavirus
    
  • 3jsb – RNAP (mutant) – Lymphocytic choriomengitis virus
    
  • 2wk4, 2uut, 2uuw – SvRNAP (mutant) – Sapporo virus
    
  • 2ckw - SvRNAP residues 1135-1649
    
  • 3nky, 4wyl, 4wyw - FmRNAP (mutant) - Foot-and-mouth virus
    
  • 1hhs, 4a8o, 4b02, 1hi8, 5fj6 – P6RNAP – Bacteriophage φ-6
    
  • 2jl9, 2jlf, 1wac – P6RNAP (mutant)
    
  • 5fj7 – P6RNAP + major inner protein P1
    
  • 2po4 – N4RNAP polymerase domain – Bacteriophage N4
    
  • 1l9k – DevRNAP N terminal – Dengue virus
    
  • 2j7u, 4c11 - DevRNAP polymerase domain
    
  • 5ccv - DevRNAP NS5
    
  • 1oks – RNAP α subunit – Measles virus
    
  • 1r4g - RNAP α subunit – Sendai virus – NMR
    
  • 1s48, 1s49, 1s4f – DvRNAP residues 71-679 – Diarrhea virus
    
  • 2cjq - DvRNAP polymerase domain
    
  • 1sh0, 1sh2, 1sh3 - NvRNAP C terminal – Norwalk virus
    
  • 1vyi - RNAP α subunit C terminal – Rabies virus
    
  • 2hcn, 2hcs, 2hfz – RNAP polymerase domain – West Nile virus
    
  • 2pgg, 2pus – RNAP – Bursal disease virus
    
  • 2r7o, 2r7q – SrRNAP – Simian rotavirus
    
  • 4au6 - RNAP – bovine rotavirus – Cryo-EM
    
  • 2yi8, 2yi9, 2yia, 2yib – IpnvRNAP – Infectious pancreatic necrosis virus
    
  • 3n6l – EvRNAP – Human enterovirus
    
  • 4uci, 4ucj, 4ucl, 4ucy, 4ucz – HmpvRNAP residues 1600-2005 – Human metapneumovirus
    
  • 4uck, 4ud0 – HmpvRNAP residues 1600-2005 (mutant)
    
  • 4zp8, 4zp9, 4zpa, 4zpb, 4zpc, 4zpd – CvRNAP residues 1724-2185 (mutant) – Coxsackievirus
    
  • 3ddk – CvRNAP residues 1724-2185
    
  • 3nah, 3nai, 3qid, 3uqs – MnvRNAP – Murine norovirus
    
  • 4wfx, 4wfy, 4wfz – CvRNAP RDRP domain (mutant)
    
  • 2j7n, 2j7o – RNAP residues 381-1402 – Neurospora crassa
    
  • 4gzk, 4ieg – RNAP – cystovirus 12
    
  • 4i1t – RNAP L – Pichinde virus
    
  • 5chs – RNAP L N-terminal – Vescicular stomatitis Indiana virus
    
  • 4xha, 4xhi – TavRNAP – Thosea asigna virus
    
  • 4miw, 5izh, 5j1n, 5j1p – RNAP L N terminal – Lassa virus
    
  • 4mtp – RNAP RDRP module – Encephalitis virus
    
  • 4cgx, 4chc – TvRNAP N terminal – Thogoto virus
    
  • 4chd – TvRNAP 627 domain
    
  • 4che, 4chf – TvRNAP cap-binding domain
    
  • 5fsw - NvRNAP C terminal – Thielavia terrestris
    
  • 5hsb – RNAP – Andes virus
    
  • 5ize – RNAP L – Hantaan virus
    
  • 5ltf – LcmvRNAP L – Lymphocytic choriomeningitis mammarenavirus
    

`**5lts - LcmvRNAP (mutant)

• • 5u0c - ZvRNAP NS5 – Zika virus
    
• RNA-dependent RNAP complex with RNA
  • 4e78, 4e7a, 4wta, 4wtc, 4wtd, 4wte, 4wtf, 4wtg, 4wti, 4wtj, 4wtk, 4wtl, 4wtm - HvRNAP Ns5b domain (mutant) + RNA
    
  • 3ol6, 2jlg, 4k4s, 4k4t, 4k4u, 4k4v, 4k4w – PoRNAP (mutant) + RNA
    
  • 3ol7, 3ol8, 3ol9, 3ola, 3olb - PoRNAP (mutant) + RNA + nucleotide
    
  • 3klv, 3kmq, 3kms, 3kna, 3nl0, 3nma, 4iqx, 4wzm, 4wzq, 4x2b, 5jxs – FmRNAP (mutant) + RNA
    
  • 3koa - FmRNAP (mutant) + RNA + nucleotide
    
  • 1wne – FmRNAP + RNA
    
  • 2e9r, 2e9t, 2e9z, 2ec0 - FmRNAP + RNA + inhibitor
    
  • 1uvi, 1uvl, 1uvm, 1uvn, 4a8f, 4a8k, 4a8m, 4a8q, 4a8s, 4a8w, [[4a8y – P6RNAP + RNA
    
  • [[3bsn, 3bso, 3h5x, 3h5y - NvRNAP + RNA + nucleotide
    
  • 2r7r, 2r7s, 2r7t, 2r7u, 2r7v, 2r7w, 2r7x – SrRNAP + RNA
    
  • 5amq, 5amr – BvRNAP + RNA
    
  • 4k50 – RNAP + RNA – Human rhinovirus
    
  • 3c2p, 3c3l, 3c46, 3q0a - N4RNAP polymerase domain + promoter DNA
    
  • 1hht, 1hi0 – P6RNAP + DNA
    
  • 1uvj, 1uvk – P6RNAP + RNA
    
  • 4k4x, 4k4y, 4k4z – CvRNAP + RNA
    
• RNA-dependent RNAP complex with protein
  • 3phw, 2pt2, 3pt2 – HfRNAP + ubiquitin
    
  • 3phx, 3pse – HfRNAP + ISG15
    
  • 2d7s, 2f8e – FmRNAP + VPG protein
    
  • 3cdw - CvRNAP + POP + VPG
    
  • 4f5x – SrRNAP + Vp2 + Vp6
    
  • 5h0r – RNAP + Vp4 + RNA - BMCPV
    
  • 3zed – IpnvRNAP + capsid protein Vp3
    
  • 4hxd – RNAP L + polyubiquitin-C – Dugbe virus
    
  • 4r71 – RNAP b chain + EF-TS EF-TU + RPS1 – Enterobacteria phage qbeta
    
  • 5jze – RNAP + ISG15 – Erve virus
    
• RNA-dependent RNAP complex with small molecule
  • 2xwy, 3mf5, 3hkw, 3hky, 3lkh, 3gnv, 3gnw, 3h98, 3g86, 3h59, 1nhu, 1nhv, 2brk, 2brl, 2gc8, 2giq, 2gir]], 2hai, 2hwh, 2hwi, 2i1r, 2ijn, 2jc0, 2jc1, 2qe2, 2qe5, 2wcx, 2who, 3ciz, 3cj0, 3cj2, 3cj3, 3cj4, 3cj5, 3cso, 3cvk, 3fqk, 3fql, 3gol, 3h5s, 3h5u, 3q0z, 3qgd, 3qge, 3qgf, 3qgg, 3qgh, 3qgi, 3ska, 3ske, 3skh, 3uph]], 3upi, 4dru, 3vqs, 3udl, 4eo6, 4eo8, 4eaw, 4gmc, 4ih5, 4ih6, 4ih7, 4iz0, 4jtz, 4jtw, 4jty, 4ju1, 4ju2, 4jjs, 4jju, 4j02, 4j04, 4j06, 4j08, 2yoj, 3tuq, 3tuv, 3u4o, 3u4r, 4mk7, 4mk8, 4mk9, 4mka, 4mkb, 4mz4, 4nld, 3tyq, 3tyv, 4mia, 4mib, 4oow, 4tlr, 5pzk, 5pzl, 5pzm, 5pzn, 5pzo, 5pzp, 5trh, 5tri, 5trj - HvRNAP Ns5b domain + inhibitor
    
  • 3gyn, 1os5, 3br9, 3bsa, 3bsc, 3cde, 3co9, 3cwj, 3d28, 3d5m, 3e51, 3frz, 3igv, 3hvo, 3h2l, 4kai, 4kb7, 4kbi, 4ke5, 4khm, 4khr, 5twm, 5twn - HvRNAP Ns5b domain (mutant) + inhibitor
    
  • 2xi3 - HvRNAP Ns5b domain (mutant) + nucleotide
    
  • 1gx5, 1gx6 - HvRNAP Ns5b domain + nucleotide
    
  • 2im1, 2im0, 2im2, 2im3, 2ily, 2ilz - PoRNAP (mutant) + nucleotide
    
  • 3n6m, 3n6n – EvRNAP + nucleotide
    
  • 3sfg – MnvRNAP + thio-uridine
    
  • 3sfu – MnvRNAP + ribavirine
    
  • 3upf, 3ur0, 4nru, 4o4r – MnvRNAP + inhibitor
    
  • 4lq3, 4lq9 – RNAP + inhibitor – human norovirus
    
  • 3cdu– CvRNAP + POP
    
  • 3eva, 3evb, 3evc, 3evd, 3eve, 3evf, 3evg – RNAP N terminal + nucleotide – Yellow fever virus
    
  • 1hi1 – P6RNAP + nucleotide
    
  • 5cx6, 5cyr - TavRNAP + nucleotide
    
  • 5hmw, 5f3t, 5hmx, 5hmy, 5hn0, 5hmz, 5iq6, 5k5m - DevRNAP Ns5 + inhibitor
    
  • 5ehg - DevRNAP NS5 + SAM + inhibitor
    
  • 5goz, 5gp1 - ZvRNAP NS5 + SAH + GTP
    
  • 5ltn, 5t2t - LcmvRNAP + inhibitor
    
• Influenza virus polymerase acidic protein (or PA or subunit P2)
  • 3hw3, 3hw4, 3hw5 - IvRNAP PA (mutant) + Mn + nucleotide – Influenza virus
    
  • 3hw6 - IvRNAP PA (mutant) + Mn
    
  • 3wi0 – IvRNAP PA (mutant)
    
  • 4w9s, 5fdd, 5fdg, 5i13, 5ieq, 5if2, 5if5, 5if7, 5if8, 5ifb, 5ifc, 5ifd – IvRNAP PA + inhibitor
    
  • 3cm8 – IvRNAP PA + RNA-directed RNA polymerase PA peptide
    
  • 4wrt, 4wsa – IvRNAP PA + PB2 + RNA-directed RNA polymerase PA + RNA
    
  • 4e5e, 4zqq, 5jht, 5jhv – IvRNAP PA residues 1-50, 73-196 + Mn
    
  • 4e5f, 4e5g, 4e5h, 4e5i, 4e5j, 4e5l, 4yyl, 4zhz, 4zi0 – IvRNAP PA residues 1-50, 73-196 + Mn + inhibitor
    
  • 3ebj, 2w69 - IvRNAP PA residues 1-256
    
  • 4iuj - IvRNAP PA residues 254-713
    
• Influenza virus polymerase basic protein 2 (or RNAP subunit P3 or PB2)
  • 4enf, 4u6o, 4j2r, 2vqz, 5ef9, 5eg9 – IvRNAP PB2 cap-binding domain
    
  • 4j2r – IvRNAP PB2 middle domain
    
  • 3cw4 - IvRNAP PB2 C terminal
    
  • 2gmo - IvRNAP PB2 C terminal - NMR
    
  • 4eqk, 5efa, 5efc – IvRNAP PB2 cap-binding domain + nucleotide
    
  • 4nce, 3wi1 – IvRNAP PB2 cap-binding domain (mutant) + nucleotide
    
  • 4ncm – IvRNAP PB2 cap-binding domain (mutant) + inhibitor
    
  • 4p1u, 4yd0, 5buh, 5jun, 5jur - IvRNAP PB2 cap-binding domain + inhibitor
    
  • 4uad, 4uae, 4uaf - IvRNAP PB2 + importin
    
  • 2vy6 - IvRNAP PB2 627- and NLS domains
    
  • 2vy7 - IvRNAP PB2 627-domain
    
  • 2vy8 - IvRNAP PB2 627-domain (mutant)
    
• Influenza virus RNAP PA+PB1
  • 2znl - IvRNAP PA + PB1
    
• Influenza virus RNAP PB1+PB2
  • 2ztt, 3a1g - IvRNAP PB1 C terminal + RNAP PB2 N terminal
    
  • 3j9b - IvRNAP PB1+PB2 + RNA
    
• Influenza virus pRNAP PA+PB1+PB2
  • 4wsb, 5fmz, 5m3h, 5m3j, 5msg - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA
    
  • 5d98, 5d9a - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2
    
• Poly(A) RNA polymerase
  • 3pq1 – hRNAP (mutant)
    
  • 4lt6 – hRNAP γ
    
  • 4nkt – SpRNAP (mutant) + UMPNPP
    
  • 4nku – SpRNAP (mutant) + RNA
    
  • 3nyb – yRNAP + AIR2
    
  • 4e7x, 4e80, 4e8f, 4ep7, 4fh3 – fyRNAP Cid1
    
  • 4fh5, 4fhp, 4fhv, 4fhw, 4fhy – fyRNAP Cid1 + nucleotide
    
  • 4ud4, 4ud5 - fyRNAP Cid1 (mutant)
    
  • 4fhx – fyRNAP Cid1 (mutant) + nucleotide
    
  • 4zrl – CeRNAP gld-2 + germline development defective 3 – Caenorhabidis elegans
    
  • 5jnb – CeRNAP gld-2 (mutant) + RNP-8
    

References

• Created with the participation of Craig T Martin.

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Karsten Theis, Joel L. Sussman, Michal Harel