ATPase 3D structures

From Proteopedia
Revision as of 04:13, 3 August 2023 by Joel L. Sussman (talk | contribs)
Jump to navigationJump to search

3D Structures of ATPase

ATPase 3D structures

Updated on 03-August-2023

**3rfu, 4bbj, 4bev, 4byg – LpATPase – Legionella pneumophila
“Zn+2 ATPase
    • 2ofg, 2ofh - sATPase N-terminal – NMR
    • 4umw, 4umv - ATPase +Mg – Shigella sonni

“Cd+2 ATPase

  • K+ transporting ATPase
  • As+ transporting ATPase
    • 3h84, 3idq, 3a36, 3a37 - yATPase GET3
    • 4pwx, 5bwk - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein
    • 5bw8 - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein
    • 4xwo - yATPase GET3 + antibody + Sec22
    • 4xvu - yATPase GET3 + antibody + NYV1
    • 4xtr - yATPase GET3 + antibody + pep12p
    • 3sja, 3sjb, 3sjc, 3sjd, 3zs8, 3zs9, 3b2e, 3vlc - yATPase GET3 + GET1 cystolic domain
    • 1ii0, 1f48, 1ii9 - EcATPase
    • 1ihu – EcATPase+Mg+ADP+AlF3
    • 3ibg - ATPase GET3 – Aspergillus fumigatus
  • H+ transporting ATPase
    • 7vh5, 7vh6 – yATPase - Cryo EM
    • 5ksd - AtATPase C terminal truncated
    • 1mhs - NcATPase – Neurospora crassa
    • 7op1, 7op3, 7op5, 7op8 – CtATPase – Chaetomium thermophilum - Cryo EM
  • Na+ transporting ATPase
    • 2db4 - EhATPase subunit K
    • 3aon - EhATPase subunits D,G
    • 3vr2, 8igu, 7coq, 8igv, 8igw - EhATPase subunits A,B
    • 3vr4, 3vr5 - EhATPase subunits A,B,D,G
    • 3vr3 - EhATPase subunits A,B + AMPPNP
    • 3vr6 - EhATPase subunits A,B,D,G + AMPPNP
    • 1yce - IlATPase rotor ring
  • H/K transporting ATPase
  • Mg+2 transporting ATPase
    • 3gwi – EcATPase P-1 NBD
  • Arg/ornithine transporting ATPase
    • 1h8e – bATPase+ADP+AlF4+ADP+SO4
    • 1h8h -bcATPase+ AMPPNP
    • 1efr - bATPase+efrapeptin
    • 3cf0, 3cf1, 3cf3 – mATPase NBD+ADP – mouse
    • 3cf2 - mATPase NBD+ADP+AMP-PNP
    • 1kmh - sATPase alpha subunit+tentoxin
    • 3fks – yATPase
    • 3ea0 – ATPase ParA, fragment – Chlorobium tepidum
    • 2qen – ATPase (mutant) Walker-type – Pyrococcus abyssi
**2r31, 2p4x – PdATPase ATP12 
    • 2zd2 – PdATPase (mutant) ATP12
    • 1d8s – EcATPase F1
    • 1vdz – PhATPase subunit A – Pyrococcus horikoshii
    • 3md0 – MtATPase+GDP
  • Monosaccharide transporting ATPase
    • 5dte – AsATPase – Actinobacillus succinogenes
    • 4zjp – AsATPase + ribopyranose
  • Phospholipid transporting ATPase
  • RNA-dependent ATPase
    • 3eaq, 3i31, 3i32 – TtATPase fragment
    • 4kbg, 4kbf - TtATPase helicase core domain
    • 5mao - TtATPase RRM domain
    • 4i69, 4i68 - TtATPase RRM domain (mutant)
    • 4i67 - TtATPase RRM domain + RNA
    • 3mwj – TtATPase N-terminal (mutant)
    • 3mwk, 3nbf – TtATPase N-terminal + 8-oxo-AMP
    • 3mwl - TtATPase N-terminal (mutant) + 8-oxoadenine
    • 3nej - TtATPase reca-like domain (mutant)
  • DNA-dependent ATPase
    • 5tnu - ATPase – Sulfolobus tokodaii
    • 6p4o, 6p4w - ATPase + endonuclease BAX1 – Sulfurisphaera tokodaii
  • Proteasome-associated ATPase
    • 8d6v, 8d6w – MtATPase subunits alpha, beta – Cryo EM
    • 7pxc – MtATPase subunits alpha, beta + Pup – Cryo EM
    • 3fp9, 3m9b, 3m9h – MtATPase intern domain
    • 3m91, 3m9d - MtATPase coiled coil domain + protein PUP
    • 5kzf – MtATPase residues 98-609
    • 5kwa – MtATPase residues 22-529
    • 6kww – ATPase subunit HsIU – Staphylococcus aureus
    • 5txv – EcATPase subunit HslU
    • 6pxk, [[[6pxl|6pxl]], 6pxx – EcATPase subunit HsIU + ADP
    • 5ji3, 5ji2 – EcATPase subunits HslU+HslV
    • 6pxi – EcATPase subunit HsIU+HsIV + ADP
    • 2wfw – ATPase substrate recognition domain – Rhodococcus erythropolis
    • 7mhb – ATPase subunit HsIU + ADP – Brucella abortus
  • Transitional endoplasmic reticulum ATPase residues 1-806
  • Transitional endoplasmic reticulum ATPase residues 1-480
    • 3hu1, 3hu2, 3hu3 – hTer-ATPase + ATPGS
    • 4ko8, 4kln, 5dyg – hTer-ATPase (mutant) + ATPGS
    • 5dyi – hTer-ATPase + ADP
    • 4kod – hTer-ATPase (mutant) + ADP
    • 5kiy, 5kiw - hTer-ATPase (mutant) + Selenoprotein S
  • Transitional endoplasmic reticulum ATPase residues 1-200
    • 3qc8, 3qq8, 3qwz - hTer-ATPase + FAS-associated factor 1
    • 3qq7 - hTer-ATPase
    • 3tiw - hTer-ATPase + E3 ubiquitin-protein ligase peptide
    • 5glf - hTer-ATPase + derlin-1 peptide
    • 5epp - hTer-ATPase N + rhomboid-related protein 4 peptide
    • 4kdl, 4kdi - hTer-ATPase + ubiquitin thioesterase OTU1
    • 5b6c - hTer-ATPase + ubiquitin fusion degradation protein
    • 5x4l - hTer-ATPase + UBX domain-containing protein
    • 1s3s - mTer-ATPase ND1 domain + P47 C terminal
    • 4rv0 - Ter-ATPase N terminal + nuclear protein localization protein – Drosophila melanogaster
  • Sarcoplasmic/endoplasmic reticulum ATPase
  • LAO/AO transport system ATPase
    • 3nxs – MsATPase + GDP
    • 6cum – MsATPase
  • DNA double-strand repair ATPase (Rad50)
    • 3aux – MjRad50 – Methanocaldococcus jannaschii
    • 3auy - MjRad50 + ADP
    • 3av0 - MjRad50 + ATP
    • 5f3w - MjRad50 + MRE11 + ATPGS
    • 5dny - MjRad50 + MRE11 + DNA
    • 3qg5 – TmRad50 NBD + MRE11
    • 3qkr, 3qks, 3qf7 - PfRad50 NBD + MRE11 – Pyrococcus furiosus
    • 4nck, 4nci, 4nch - PfRad50 NBD (mutant)
    • 4ncj - PfRad50 NBD (mutant) + BeF3 + ADP
    • 3qkt - PfRad50 NBD + AMPPNP
    • 3qku - PfRad50 NBD + AMPPNP + MRE11
  • MipZ ATPase
    • 2xit, 2xj4 – CcMipZ – Caulobacter crescentus
    • 2xj9 – CcMipZ (mutant)
  • ATPase Rava
    • 5fl2, 4upf – EcATPase LARA domain + lysine decarboxylase
    • 4upb, 6q7l, 6q7m – EcATPase + lysine decarboxylase – Cryo EM
    • 3nbx – EcATPase Rava + ADP
    • 6sza, 6szb – EcATPase Rava + ADP – Cryo EM
  • FlaI ATPase
    • 4ihq, 4ii7 – ATPase (mutant) – Sulfolobus acidocaldarius
  • Vescicle-fusing ATPase
    • 6mdm, 6mdn – haATPase + SNAP-25 + syntaxin-1A + VAMP-2 + NSF attachment protein – hamster – Cryo EM
    • 6mdo, 6mdp – haATPase + SNAP-25 – Cryo EM
  • ATPase Invc
    • 6sdx – ATPase – Salmonella enterica
  • ATPase in ribosome
    • 6tmf – ATPase – Thermococcus celer
  • P5A-type ATPase
  • ATPase SpaL/MxiB
  • Plasma membrane ATPase
  • ATPase synthesizing ATP or ATP synthase
  • V-ATPS subunit A
  • V-ATPS subunit B
  • V-ATPS subunit C
    • 3v3c – ATPS subunit C – pea
    • 4mjn - F1-ATPS - wheat
    • 2w5j, 6tqj – sF1-ATPS - spinach
    • 3u2f, 3u2y, 3u32, 3ud0 - yATPS subunit C
    • 1ijp, 1l6t – EcF1-ATPS subunit C (mutant) - NMR
    • 4utq – EcF1-ATPS membrane domain + insertase YIDC – Cryo EM
    • 3lg8 - MjATPS subunit C C-terminal
    • 2wie, 2xqs, 2xqt, 2xqu - ATPS subunit C – Arthrospira platensis
    • 3zk1, 3zk2 - ATPS subunit C
    • 7wem – BaF1-ATPS subunit C - NMR
    • 4bem - F1F0-ATPS – Acetobacterium woodii
  • V-ATPS subunit E
    • 2dm9, 2dma - PhATPS subunit E
    • 4dt0 – PhATPS subunit E
    • 2kk7 - MjATPS subunit E N-terminal – NMR
  • V-ATPS subunit F
    • 2ov6 - MmATPS subunit F - NMR
    • 2d00 - TtATPS subunit F
    • 2qai - PfATPS subunit F
    • 2i4r - AfATPS subunit F
  • F1F0 ATPS α subunit
    • 2r9v - F1-ATPS – Thermotoga maritima
  • F1F0 ATPS β subunit
    • 1pyv - F1-ATPS – NMR – tobacco
    • 1b9u – EcF1-ATPS membrane domain – NMR
    • 1l2p – EcF1-ATPS dimerization domain
    • 2khk - EcF1-ATPS fragment – NMR
    • 4q4l - F1-ATPS – Burkholderia thailandensis
  • F1F0 ATPS γ subunit
    • 1wu0 – BaATPS – NMR
    • 1a91, 1c0v, 1aty, 1c99 – EcF1-ATPS – NMR
    • 2wgm – ItF0-ATPS – Ilyobacter tartaricus
    • 4v1g – MpF0F1-ATPS – Mycobacterium phlei
    • 4v1f, 4v1h – MpF0-ATPS + drug
    • 2x2v, 4cbk, 4cbj – BpF0-ATPS – Bacillus pseudofirmus
    • 3zo6 – BpF0-ATPS (mutant)
  • F1F0 ATPS δ subunit
    • 1abv – EcF1-ATPS N terminal – NMR
  • F1F0 ATPS ε subunit
    • 1aqt – EcF1-ATPS (mutant)
    • 1bsh, 1bsn – EcF1-ATPS – NMR
    • 2e5t, 2e5u – BaF1-ATPS C terminal – NMR
    • 2e5y – BaF1-ATPS
    • 6pi4 – MsF1-ATPS
    • 7vil – F1-ATPS – Mycobacterium abscessus - NMR
    • 5yio – MtF1-ATPS+GDP – Mycobacterium tuberculosis - NMR
  • F1F0 ATPS α,γ subunits
    • 1c17 – EcF1-ATPS – NMR
  • F1F0 ATPS β,δ subunits
    • 2cly – bF1-ATPS + ATPS coupling factor
  • F1F0 ATPS γ,ε subunits
  • F1F0 ATPS α,β,γ,δ subunits
    • 1qo1- yF1-ATPS + protein 9

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Openfox