ABC transporter

From Proteopedia

1 Function
2 Structural highlights
3 Disease
4 3D Structures of ABC transporter

Function

ATP Binding Cassette (ABC) Transporters are ATP-dependent membrane proteins critical for most aspects of cell physiology, including the uptake of nutrients (importers) and elimination of waste products and energy generation (exporters) which are predominantly expressed in excretory organs, such as the liver, intestine, blood-brain barrier, blood-testes barrier, placenta, and kidney^[1]^[2]. There are many ABC Transporters in organisms, for instance, there are 28 in yeast, 58 in Caenorhabditis, 51 in Drosophila,129 in Arabadopsis,and the 69 ABC transporters in E. coli account for almost 5% of its genomic coding capacity^[3]. ABC transporter protein translocates substrates across membranes. It contains a Solute Binding Domain (SBD). CFTR (Cystic Fibrosis Transmembrane Regulator) translocates chloride and thiocyanate. It contains a nucleotide binding domain (NBD). In humans the ABC transporters are classified into subfamilies, i.e. ABCB6 is ABC subfamily B member 6. The Lipoprotein-release ABC transporter complex LolCDE is responsible for the transport of lipoproteins from the inner cell membrane to the outer membrane^[4].
ABC Transporters have two main functionalities acting either as exporters or importers. ABC Exporters release bound drugs to the extracellular environment, while ABC Importers accept substrate molecules from their relevant substrate-binding proteins^[5]. For instance the Vitamin B12 transporter BtuCD (PDB 1l7v) is a binding protein-dependent ABC transporter system that uses the power of ATP hydrolysis to pump vitamin B12 into the cytoplasm of E. coli^[6].

For details of serotonin transporter see Serotonin Transporter
For details of sugar transporter see GLUT1,Glut3, Sanbox glut3, Glucose transport protein and GLUT4
For details of urea transporter see Urea transporter
For details of Cystic fibrosis transmembrane conductance regulator (CFTR) see Cystic fibrosis transmembrane conductance regulator (CFTR) and CFTR (Hebrew)
For details on plant abc transporter see Rice abc transporter
For details on dipeptide abc transporter see Periplasmic dipeptide-binding protein
For details on oligopeptide abc transporter see Oligopeptide-binding protein
For details on ABCG2 multi drug transporter see ABCG2 multidrug transporter

Structural highlights

To achieve export, ABC transporters require a minimum of four domains. Two transmembrane domains (TMDs) form the ligand binding sites and provide specificity, and two NBDs bind and hydrolyze ATP to drive the trans-location of the bound ligand. The NBDs, but not the TMDs, are homologous throughout the family and have several characteristic motifs including the Walker A (GxxGxGKST) and B (ILLDEAT) motifs common to many nucleotide binding proteins and others like the ABC signature, stacking aromatic D, H, and Q loops, which are unique to the family^[2].

Active site of Arginine ABC transporter complex with arginine (PDB code 3tql). Water molecules are shown as red spheres.

Disease

There are currently 50 known ABC transporters in human. Of these there are 13 genetic diseases known to be associated with 14 of them. Among the diseases are cystic fibrosis, Stargardt disease, age-related macular degeneration and others. Mutations in CFTR lead to Cystic Fibrosis. ABC Exporters use ATP to drive import and export functions providing multidrug resistance. In eukaryoles, for instance, ABC Transporters are problematic because they export therapeutic drugs such as those used in chemotherapy regimens, which must be changed frequently to avoid the rejection of the drugs^[5].