- 1 : simple surface on chain A of 1d66. Colored translucent green. This surface was generated with the representations tab of the SAT.
- 2 (no isosurfaces). After clicking this standard SAT-generated green link, then
(From uploaded file http://proteopedia.org/wiki/images/6/67/6zgi-cavities.jvxl -- see Image:6zgi-cavities.jvxl)
(From uploaded file http://proteopedia.org/wiki/images/c/c6/6zgi-cavities.pngj -- see Image:6zgi-cavities.png)
- 4 . SAT not involved. PNGJ file generated externally in the Jmol Java application, then uploaded to Proteopedia as for the previous item above.
- 5 , then saving scene. (No molecule loaded with the SAT "load molecule" tab.)
Tested in Firefox (current version) on macOS Mojave, mid-2014 MacBook Pro, 2.2 GHz Intel Core i7.
- 6 . It took 8.5 min to generate the cavity isosurfaces after I entered the command "isosurface minset 100 interior cavity 3.0 10.0" into the command slot in the SAT. (This command takes ~45 sec in the Jmol Java app which is therefore 11-fold faster for this operation.) After clicking this green link, I waited 11 min and the scene still did not appear. So I think the isosurfaces are being generated again when the green link is clicked.
