User:Angel Herraez/Sandbox 2
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![]() Jmol._Canvas2D (Jmol) "jmolApplet1"[x] loadScript /wiki/extensions/jsmol/j2s/core/package.js loadScript /wiki/extensions/jsmol/j2s/core/corejmol.z.js loadScript /wiki/extensions/jsmol/j2s/J/translation/PO.js loadScript /wiki/extensions/jsmol/j2s/core/corescript.z.js JSmol exec jmolApplet1 start applet null Jmol JavaScript applet jmolApplet1__622641591551355__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet1__622641591551355__) vwrOptions: { "name":"jmolApplet1","applet":true,"documentBase":"https://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_2","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__622641591551355__","codePath":"https:/wiki/extensions/jsmol/j2s/","display":"jmolApplet1_canvas2d","loadStructCallback":"manageLoadStructCallback","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"622641591551355","messageCallback":"msgCb","bgcolor":"black" } setting document base to "https://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_2" (C) 2015 Jmol Development Jmol Version: 14.31.8 2020-09-26 10:04 java.vendor: Java2Script (HTML5) java.version: 2019-06-08 00:17:46 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet1 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor black backgroundColor = "black" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" StatusManager callback set for APPLETREADYCallback f=Jmol._readyCallback cb=APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback manageLoadStructCallback LOADSTRUCTCallback = "manageLoadStructCallback" StatusManager callback set for LOADSTRUCTCallback f=manageLoadStructCallback cb=LOADSTRUCT Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback msgCb MESSAGECallback = "msgCb" StatusManager callback set for MESSAGECallback f=msgCb cb=MESSAGE Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue doTranslate null Note -- Presence of message callback disables disable translation; to enable message translation use jmolSetTranslation(true) prior to jmolApplet() Note -- language translation disabled Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet1__622641591551355__ ready script 1 started pdbGetHeader = true FileManager opening url https://proteopedia.org/wiki/extensions/Proteopedia/spt/functions.spt?1733933141 loadScript /wiki/extensions/jsmol/j2s/core/coretext.z.js Loading, please wait ... platformSpeed = 8 FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/3cin.pdb) FileManager opening url https://files.rcsb.org/download/3cin.pdb The Resolver thinks Pdb loadScript /wiki/extensions/jsmol/j2s/core/corebio.z.js ISOMERASE 11-MAR-08 3CIN CRYSTAL STRUCTURE OF A MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELAT PROTEIN (TM_1419) FROM THERMOTOGA MARITIMA MSB8 AT 1.70 A RES found biomolecule 1: A biomolecule 1: number of transforms: 4 CL = CHLORIDE ION MG = MAGNESIUM ION NAD = NICOTINAMIDE-ADENINE-DINUCLEOTIDE Setting space group name to I 2 2 2 3CIN Time for openFile(https://files.rcsb.org/download/3cin.pdb): 2190 ms reading 3311 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. model 1.1 alternative locations: AB Default Van der Waals type for model set to Jmol 3311 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically manageLoadStructCallback failed TypeError: Cannot read properties of undefined (reading 'replace') Time for creating model: 103 ms ISOMERASE 11-MAR-08 3CIN CRYSTAL STRUCTURE OF A MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELAT PROTEIN (TM_1419) FROM THERMOTOGA MARITIMA MSB8 AT 1.70 A RES found biomolecule 1: A CL = CHLORIDE ION MG = MAGNESIUM ION NAD = NICOTINAMIDE-ADENINE-DINUCLEOTIDE 3CIN loadScript /wiki/extensions/jsmol/j2s/core/corescriptmath.z.js loadScript /wiki/extensions/jsmol/j2s/J/bspt/PointIterator.js Script completed Jmol script terminated |
Show: |
Drag the structure with the mouse to rotate |
These controls are inserted directly, as wiki extension tags:
Prepare Surface
(wait until the hourglass cursor disappears, then try the following controls)
These 3 controls are inserted using templates:
· Toggle Surface ·
(The checkboxes AGAIN are working properly -- the key is to have a function setupCheckboxShiftClick() that overrides the one included in wikibits.js
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