Hypoxia-Inducible Factors

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Crystal structure of N-terminal HIF-2α/HIF-1β Complex with HRE DNA (PDB code 4ZPK)

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Hypoxia-inducible factors (HIFs) are transcription factors responsible for the cellular adaptation to hypoxia, which is a condition of low oxygen availability. Among the genes regulated by HIF, we can find those involved in erythropoiesis, angiogenesis and metabolism.

Contents

Structure [1][2]

HIFs were discovered more than 30 years ago thanks to the Erythropoietin (EPO) gene, an hormone that is transcribed in hypoxic conditions and stimulates erythrocyte proliferation[3]. EPO presents an Hypoxia Response Element (HRE) that resulted to be bound by HIF [4]. HIFs form part of the basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) family of proteins[5]. Active HIFs are achieved by heterodimerization of a constitutively expressed subunit and an oxygen-regulated subunit, which can be HIF-1α or its paralogs and HIF-3α (Table 1.). HIF-β is also known as the aryl hydrocarbon nuclear translocator (ARNT)[6]. Their structure can contain the following domains from the N-terminus to the C-terminus:

  • basic Helix-Loop-Helix (): essential for heterodimer formation and DNA binding to HRE
  • Per-Arnt-Sim (): their surface forms the key core of the heterodimer.
  • Oxygen-dependent degradation domain (ODDD): mediates oxygen-regulated stability in the α subunits. This domain contains two Proline residues susceptible of hydroxylation and one Lysine that can be acetylated
  • N-terminal and C-terminal transactivating domains (N-TAD and C-TAD): bind different coactivators to promote gene expression, such as p300/CBP[7]. HIF-3α lacks one of the TAD domains.
HIF members structure
HIF members structure
Member Gene Protein
HIF-1α HIF1A hypoxia-inducible factor 1, α subunit
HIF-2α EPAS1 endothelial PAS domain protein 1
HIF-3α HIF3A hypoxia-inducible factor 3, α subunit
HIF-1β ARNT aryl hydrocarbon receptor nuclear translocator
HIF-2β ARNT2 aryl hydrocarbon receptor nuclear translocator 2
HIF-3β ARNT3 aryl hydrocarbon receptor nuclear translocator 3
Table 1: Members of the HIF family


Physiological Function

HIF pathway
HIF pathway

Both HIF-α and β subunits are constitutively and ubiquitously expressed in almost every single cell, although some isoforms may be predominant in some specific tissues[8]. For example, HIF-2α is mostly expressed in the endothelium, kidney, lung, heart and small intestine . While HIF-β protein levels in the cell are constant, HIF-α has a short half-life (~ 5 mins) and is highly regulated by oxygen through its ODDD domain. With normal oxygen levels (normoxia), HIF-α protein levels are rapidly degraded, resulting in essentially no detectable HIF-α protein. However, in hypoxic conditions HIF-α becomes stabilized and is translocated from the cytoplasm to the nucleus, where it dimerizes with HIF-β and the HIF complex formed becomes transcriptionally active. More than 100 genes with varying functions have been described to be transcribed by the action of HIF. Moreover, HIF regulates up to 2% of all human genes in arterial endothelial cells, either directly or indirectly[9]. In response to hypoxia, the capacity of red blood cells to transport oxygen is upregulated by the expression of genes like EPO, essential in erythropoiesis, and genes involved in iron metabolism. In addition, a large number of genes involved in different steps of angiogenesis have been shown to increase by hypoxia challenge, being the Vascular Endothelial Growth Factor (VEGF) among them. VEGF directly recruits endothelial cells into hypoxic areas to generate new blood vessels by stimulating their proliferation. Furthermore, HIF complexes have been shown to induce pro-survival factors such as Insulin-like Growth Factor-2 (IGF2) and Transforming Growth Factor-α (TGF-α), which in turn enhances expression of HIFα itself.

Regulation of HIF-α subunits is achieved by pos-translational modifications such as hydroxylation, ubiquitination, acetylation and phosphorylation. De novo synthesized cytoplasmic HIF-α is rapidly hydroxylated on Pro402 and Pro564 (in HIF-1α) or Pro405 and Pro531 (in HIF-2α) by a family of Prolyl Hydroxylases (PHD) that recognize the consensus sequence LXXLAP . These PHD require an oxygen molecule that will be splitted to catalyze the hydroxylation of the target prolines[10]. Once the two proline residues of HIF-α are converted to hydroxyproline, the Von Hippel-Lindau tumor suppressor (pVHL) will recognize it. pVHL acts as the substrate recognition component of a complex with E3 ubiquitin ligase activity that will then polyubiquitinate HIF-1α on Lysine 532 for proteasomal degradation[11]. In hypoxic conditions, PHDs will be inactive due to the lack of oxygen, so HIF-α can escape proteasomal degradation and translocate to the nucleus to active gene expression. Additional modifications can also modulate HIF-α properties: acetylation of Lys532 by Arrest-Defective-1 (ARD1) favors the interaction of HIF-1α with pVHL[12]; hydroxylation of Asn803 or 851 within the C-CAD domain (in HIF-1α or HIF-2α, respectively) by Factor Inhibiting HIF-1 (FIH-1) prevents interaction with p300/CBP, thus inhibiting transcription[13]. Furthermore, Mitogen-Activated Protein Kinase (MAPK) pathway seems to be able to phosphorylate HIF-α in response to growth factors. This phosphorylation would increase HIF complex transcriptional activity rather than affecting its stability or DNA-binding ability[14].

HIFs as pharmacological targets

HIF activators

Due to the protective role of HIF, therapies based on small-molecules that stabilize HIF-α have attracted a lot of attention. In pathologies such as ischemia or stroke, HIF activation could help to reduce the damage done by the lack of oxygen and restore tissue functionality. This objective can be achieved by two different ways: inhibition of HIF-PHD pathway or without the inhibition of PHDs [15].

HIF-1α Upregulation via Inhibition of PHD Pathway

This group includes the majority of HIF-1α upregulators. PHDs inhibition can be achieved through different interventions:

  • Iron chelators and competitors: Iron chelators reduce the number of free iron (Fe2+) by binding tightly to it. In this way, PHD enzymes do not have enough available iron to carry out the hydroxylation reaction and the expression of HIF-1α is upregulated. Also, iron competitors such as Co2+ or Mn2+ can be used [15]. Deferoxamine (DFO) and mimosine were the first iron chelators to mediate HIF-1α neuroprotection. Pre-treatment with DFO protected neurons from oxidative stress-induced death by inhibiting PHDs, therefore increasing mRNA and protein expression of both HIF-1α and its controlled genes [16]. 2,2-dipyridyl (DP) is a liposoluble iron chelator that upregulates HIF-1α expression. Treatment with this drug decreased expansion of tissue damage after ischemia and protected neurons and endothelial cells by decreasing the amount of reactive oxygen species (ROS) [17]. Pre-treatment with DP showed more neuroprotection than post-treatment, which makes it difficult to translate into the clinic.
  • 2-oxoglutarate: is a required co-substrate for the hydroxylation reaction by PHDs. So, compounds such as hydroxybenzenes or their analogous can inhibit PHD action to stabilize HIF-1α an allow gene expression of its targets. Dimethyloxalylglycine (DMOG) is a cell permeable ester that prevents HIF-1α degradation and increases VEGF levels in ischemic neurons. Studies in animal stroke models showed reduced ischemic injury in neurons and a lower degree of blood-brain barrier damage [18].
  • Alternative mechanism of action: Instead of sequestering Fe2+ ions or mimicking 2-oxoglutarate binding, some molecules can bind directly into the active site of PHDs. FG-4497 is a PHD inhibitor that stabilizes HIF-1α and upregulates VEGF and EPO in murine cell lines. It has also been shown to enhance cell survival following oxygen-glucose deprivation. Indeed, intraperitoneal administration of FG-4497 can reduce infarct size[19]. Pre-treatment with this drug also showed neuroprotection following permanent cerebral ischemia. On the other hand, Folic acid (FA) can directly inhibit PHD2, FIH-1 and pVHL. Post-ischemic in vivo treatments showed that FA upregulated HIF-1α and its target genes, conferring neuroprotection[20].

These treatments have some disadvantages because the iron chelators and 2OG analogues can interfere in different pathways. In this sense, some studies have shown the activation of pro-death proteins on brain cells after treatment with PHD inhibitors. So, novel drugs that specifically target HIF-1α would be a better option[15].

HIF-1α Upregulation Without the Inhibition of PHDs

These kinds of molecules have been recently discovered. They can upregulate HIF-1α in different ways:

  • MiR-335 is a microRNA that directly regulates HIF-1α. Treatment with this microRNA decreased infarct volume in rat models when administered early after ischemia induction, but inhibition of miR-335 in later phases surprisingly had beneficial effects. This could be due to the biphasic nature of HIF-1α[21].
  • Proteasome inhibitors such as MG-132 can stabilize HIF-1α, with better prognosis when combined with DMOG. Other proteasome inhibitors, like epoxomicin or Bsc2118[22], are also able to reduce infarct size and promote cell survival in ischemic conditions, being even more effective than PHDs inhibitors[23].


HIF inhibitors

Given the significant role of the dysregulation of the HIF pathway in several diseases, numerous efforts have been devoted to the development of inhibitors that target the HIF pathway. There are two major categories of the HIF inhibitors: direct HIF inhibitors which affect the expression or function of the HIF molecules, and indirect HIF inhibitors which regulate other molecules in upstream or downstream pathways and affect the transcription, translation or degradation of the factor, ultimately altering the HIF signal as one of the targets.

Indirect HIF inhibitors

Inhibitors of HIF mRNA expression

EZN-2968 is an RNA antagonist composed of a third-generation oligonucleotide, a technology that specifically binds and inhibits the expression of HIF-1α mRNA. It has shown potent (IC50 = 1–5 nM) and selective inhibition of HIF-1α mRNA and protein expression in both normoxia and hypoxia [24]. Preclinical studies both in vitro and in vivo in xenograft prostate cancer mice showed promising results [24]. This compound was evaluated in Phase I clinical trials in patients with advanced solid tumors and was well tolerated [25], while a Phase II trial was inconclusive due to premature closure [26].

Inhibitors of HIF protein translation
  • PI3K/Akt/mTOR inhibitors: PI3K/Akt/mTOR plays a major role in the upregulation of HIF-1 several human cancer cell lines, mainly by increasing the rate of HIF-1α protein translation. Although the process by which this pathway regulates HIF protein translation is still poorly understood, several mTOR inhibitors, such as temsirolimus and everolimus, which are two FDA approved agents for the treatment of different types of cancer, have shown to inhibit HIF-1α.
  • Camptothecin analogues (CPTs): CPTs analogues are used as chemotherapeutic agents that induce the formation of Topoisomerase I-DNA cleavage complexes, which in the presence of DNA replication generate double strand DNA breaks and cytotoxicity. Among the CPTs is Topotecan, a chemotherapeutic agent that has been approved for the treatment of ovarian cancer, cervical cancer and non-small cell lung carcinoma. This agent act as a HIF inhibitor by blocking HIF-1α protein accumulation and transcriptional activity in a topoisomerase I-dependent manner[27].
  • Steroidal HIF inhibitors: 2-Methoxyestradiol (2ME2 or panzem) is a natural metabolite of estradiol that inhibits HIF-1α translation and transcriptional activity. Although the specific mechanism by 2ME2 and its synthetic analogues inhibit HIF is unknown, these compounds bind to the colchicine binding site of tubulin and cause the disruption of tumor interphase microtubules, which results in repression of HIF-1α at translation level [28]. 2ME2 and its synthetic analogues have shown antitumoral activity in preclinical models as well as favorable oral bioavailability, metabolic stability and safety profiles [29]. Unfortunately, 2ME2 has been evaluated in several clinical trials both alone and in combination with other drugs and has shown limited efficacy in the treatment of different types of cancer.
Inhibitors of HIF stabilization
  • HSP90 inhibitors: The binding of HSP90 to HIF-1α promotes HIF-1α activity by blocking the pVHL-independent proteasomal degradation and also by helping HIF-1α heterodimers acquire the appropriate conformation to recruit p300 and consequently initiate HIF transactivation. The first HSP90 inhibitor identified was the natural product geldanamycin, a benzoquinone ansamyzine antibiotic that inhibits HSP90 by competing with its ATP binding site. Several HSP90 inhibitors have been developed since, and despite their promising results in preclinical studies, they have demonstrated limited efficacy during clinical trials [30].
  • Histone deacetylase inhibitors (HDACi): Histone deacetylases mediate the removal of acetyl groups from target proteins, regulating their function[31]. Treatment with HDACi results in the hyperacetylation of histones and other target proteins such as the chaperone HSP90, leading to a loss of activity. It was recently described that this HSP90 inhibition by an HDACi such as Vorinostat leads to an alteration in HIF-1α signaling by interfering with its ability to translocate to the nucleus[32], although other mechanisms of alteration of HIF-1α signalling by HDAC1 have been proposed[33]. Vorinostat and Romidepsin have been recently approved for the treatment of cutaneous T cell lymphoma (CTCL), and these and others are currently being evaluated for the treatment of various tumors, both alone and in combination with other agents[33].

Direct HIF inhibitors

Structure of Echinomycin bound to the specific DNA regions targeted by HIF, PDB: 5ytz

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Inhibitors of HIF-1 dimerization
  • PT2385 and PT2399 are recently discovered small molecules and selective HIF-2α inhibitors that bind to the HIF-1β hydrophobic pocket and allosterically block its dimerization with HIF-2α (see more in Cancer).
  • Acriflavine is a mixture of trypaflavin (3,6-diamino-10-methylacridinium chloride) and proflavine (3,6-diaminoacridine), which has trypanocidal, antibacterial, and antiviral activities. Acriflavine is also a HIF inhibitor that acts through inhibition of HIF-1 dimerization by binding to the PAS-B subdomain of HIF-1α and HIF-2α[34]. This agent has demonstrated highly promising antitumor activity against a wide spectrum of cancers, including colorectal, hepatocellular, and ovarian cancer cell lines, and more recently in malignant brain cancer both in vitro and in vivo[35]. Its promising safety profile and characteristic ability of binding to both HIF-1α and HIF-2α subunits makes it a promising candidate for clinical evaluation.
Inhibitors of HIF-1 transcriptional activity
  • Cardenolides are natural steroids with 25–26 carbon atoms and a five or six-membered lactone ring at C-17. Among them, Digoxin is a widely used cardiac glycoside that has been in clinical use for the treatment of heart failure for many years. This compound also shows HIF-1 inhibitory activity, which has demonstrated efficiency to block tumor growth, invasion, vascularization and metastasis of breast cancer (among other cancer types) both ex vivo and in vivo assays[36]. Digoxin was well tolerated by patients of prostate cancer in a phase II clinical trial and has been evaluated both alone and in combination with other therapies for other types of cancer. It has also demonstrated great efficacy as an inhibitor of pathological angiogenesis in a murine model of ischemic retinopathy[37].
  • Chetomin is an antimicrobial dithioketopiperazine fungal metabolite which acts as a HIF-1 inhibitor by blocking its transcriptional co-activation pathway. Chetomin binds to the CH1 domain of the co-activator p300/CBP and disrupts its tertiary structure, thus hindering its interaction with HIF-1 and lowering its transactivation. This compound exhibited antitumoral activity both in vitro and in vivo in a murine model of prostate cancer[38], however, the usefulness of this HIF inhibitor is limited by its toxicity.
  • Bortezomib is the first proteasome inhibitor that has been approved by the FDA, in this case for the treatment of multiple myeloma. It has more recently been identified as an HIF-1 inhibitor which simulates the interaction between the C-TAD domain of HIF-1 and FIH target site, thus enhancing FIH mediated repression of p300 recruitment and lowering HIF transactivation[39].
Inhibitors of HIF-1/DNA binding

Echinomycin is a natural cyclic peptide that belongs to the quinoxaline antibiotic family. It also acts as a HIF-1 inhibitor by specifically binding to the core of its recognition sequence, impeding HIF-1 to bind to its target DNA sequence[40]. Although it demonstrated antitumor activity in preclinical studies, no significant antitumoral activity was observed in clinical trials[40].

Clinical Significance

HIFs are involved in many pathologies that involve adaptations to reduced nutrient supply or oxygen availability. In some cases, like in ischemia or stroke, HIF activation can lead to a better cell survival and adaptation, while in pathologies such as cancer, tumoral cells take advantage of HIF properties to enhance their survival inside the body. For this reason, seek of compounds able to modulate HIF activity in both ways has been an active field of research for the past decades.

Cancer

Structure of PT2385 inside the hydrophobic pocket of HIF-2α, PDB: 6e3s. Amino acids which conformation is disturbed are shown in orange (M252, Y278, H293)

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Structures of PT2385 and PT2977
Structures of PT2385 and PT2977
HIF-2α pathway in ccRCC
HIF-2α pathway in ccRCC
Absorption of PT2385 from the intestine
Absorption of PT2385 from the intestine

In the field of cancer, overexpression and activation of HIF has been associated with malignancy in tumour cells, while low expression has been linked to normal cells and benign tumours. When tumours reach a specific size, they develop hypoxic regions that, in order to adapt, they overexpress HIF which promote the transcription of several genes involved angiogenesis, cell proliferation, glucose metabolism, metastasis, inflammation, and evasion of anti-tumour immune responses[41]. For instance, HIF-1α helps hypoxic tumour cells to switch their metabolism from oxidative phosphorylation to glycolysis thus triggering in this way the well-known Warburg effect[42]. In fact, intratumoral hypoxia is usually associated with increased risk of invasion, metastasis, and patient mortality.

This way, these factors are directly implicated in the development and progression of several types of cancer. Consequently, HIF regulation is a crucial survival pathway for which novel strategies of cancer therapy could be developed. In fact, a growing number of HIF-1/2α inhibitors are nowadays being identified, such as PT2385 [(S)-3-((2,2-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl)oxy)-5-fluorobenzonitrile] and PT2977 [3‑[(1S,2S,3R)‑2,3-Difluoro-1-hydroxy-7-methylsulfonylindan-4-yl]oxy-5-fluorobenzonitrile]. However, none of them have been clinically approved yet.

PT2385 and PT2977 are, respectively, first and second-generation selective small-molecule inhibitors of HIF-2α, developed for the treatment of advanced ccRCC. In this cancer, the pVHL tumor suppressor is defective in approximately 90% of patients, resulting in the stabilisation of both HIF-1ɑ and HIF-2ɑ proteins which leads to the expression of a genetic program essential for the initiation and progression of ccRCC. In fact, it has been demonstrated that HIF-2α is a key tumorigenic driver in ccRCC and, therefore, it constitutes the major cause of malignancy. Both compounds are specific antagonists of HIF-2ɑ proteins that allosterically block HIF-2ɑ/ARNT dimer formation, preventing HIF2α transcriptional activity and tumour growth in advanced ccRCC patients.

Pharmacodynamics

PT2385 and PT2977 are non-competitive allosteric antagonists as they disrupt HIF-2α dimerization to ARNT by binding to a hydrophobic pocket (allosteric site) present in the HIF-2α/PAS-B domain. The Kd for the PT2385–HIF-2α-PAS-B interaction is approximately 50 nmol/L. In this case, the binding does not perturb the beta-sheet interface of the two PAS-B domains but causes significant changes to residues H293, M252, and Y278 on the opposite face of the beta-sheet floor which suggest that these residues are responsible for dimer disruption[43].

Pharmacokinetics

PT2385 was the first HIF-2α inhibitor to be tested in humans and to show activity in ccRCC patients. During the first clinical trial, the treatment with PT2385 caused a clear decrease in the levels of erythropoietin (known to be regulated by HIF-2α), which indicated target engagement and biologic activity. PT2385 was administered orally at twice-per-day doses of 100−1800 mg, not causing dose-limiting toxicity at any dose. Maximum compound exposure was reached at the dose of 800 mg twice a day which was determined to be the recommended phase 2 dose (RP2D). Regarding the efficacy, around 66% of patients showed antitumor activity, however, the level of response was very variable among them (patients were grouped fromcomplete response to stable disease).

PT2385 had a favourable safety profile as the side effects were not severe and all patients continued with the treatment regardless of them. The most common ones reported were anemia, which might be the result of the reduced erythropoietin, and episodes of hypoxia. Also, no cardiac toxicity or hypertension were observed which was interesting as these effects had been associated with anti-VEGF receptor chemotherapeutic agents[44].

A limitation of PT2385 was the variable bioavailability among participants as it was seen that a significant proportion of the patients were underexposed. In fact, the main metabolite detectable in plasma was the glucuronide PT2639, which is the product of the glucuronidation of PT2385 by UGT2B17, suggesting that the extensive intestinal metabolism of the drug was the reason of the suboptimal pharmacokinetic properties it presented. This way, after oral administration PT2385 is absorbed through the enterocytes by passive transcellular diffusion. Once there, a small portion is transported to the blood, while the rest is metabolized by UGT2B17 to form PT2639. Then, this metabolite can be absorbed into the bloodstream or actively transported (MRP2) to the intestinal lumen where it can be reconverted into PT2388 by a bacterial β-glucuronidase[45].

Due to the highly variable drug exposure of PT2385, a second-generation clinical candidate compound was developed (PT2977, also known as Belzutifan or MK-6482). The strategy consisted in the modification of the structure of PT2385 by changing the geminal difluoro group to a vicinal difluoro group. This allowed a reduction in the glucuronidation reactivity, leading to an improvement in the pharmacokinetic performance. PT2977 decreased lipophilicity and was about 10-fold more potent than PT2385 in preclinical in vivo studies. More specifically, to achieve the same antitumoral effect, the dose of PT2977 was about 1/10 of the PT2385 one. In fact, during phase 1 dose-escalation trial of PT2977, RP2D was determined to be 120 mg as compared with 800 mg in the case of PT2385[46].

PT2385 PT2977
LogD7.4: 2.2 LogD7.4: 1.2
VEGFA EC50: 46 nM VEGFA EC50: 17 nM
Human PPB: 82% bound Human PPB: 52% bound
EC85: 540 ng/mL EC85: 540 ng/mL
Table 2: Comparison between PT2385 and PT2977 properties

Both drugs are nowadays in clinical trials. In the case of PT2385, it is being evaluated in combination with other active agents for ccRCC (NCT02293980) and alone for VHL-associated ccRCC (NCT03108066). Also, as a monotherapy for the treatment of recurrent glioblastoma (NCT03216499). In the case of PT2977, it is currently being evaluated in a dose-escalation trial in advanced ccRCC (NCT02974738) and for VHL-associated ccRCC (NCT03401788). Last, it is in a phase 3 trial for ccRCC in combination with everolimus (NCT04195750).

Stroke

Stroke is defined as a neurological deficit attributed to an acute focal injury of the CNS by a vascular case. There are two different types of strokes. The most common one is cerebral ischemia and it is due to the reduction of blood flow resulting from artery occlusion. Despite cerebral ischemia being one of the major causes of death, there is not an effective therapy yet. The central objectives for developing ischemic stroke treatments are the prevention of neuronal death and the improvement of recovery following ischemic injury[47]. Traditional approaches have failed when translated to the clinic because of the multiple mechanisms and heterogeneous populations that are affected during stroke. in this scenario, HIF could be a potential candidate given the multiple pathways involved in its cascade. The neuroprotective effect of HIF-1α is due to the promotion of nutrient and O2 transport by the induction of proteins such as VEGF and EPO. Also, HIF-1α may prevent apoptotic cell death through the inhibition of cytochrome c release and suppression of p53. Despite the protective effects of HIF-1α, some studies have reported the contribution of HIF-1 to cellular and tissue damage by promoting pro-apoptotic pathways via p53 or necrosis[48]. Another major obstacle to develop treatments is that HIF-1α mRNA and protein levels have a biphasic expression pattern following ischemic injury. At early stages, HIF-1α upregulation activates pro-apoptotic pathways while at later stages boosts cell survival pathways. This equilibrium is really important in the administration of HIF-1α activating drugs to avoid increasing tissue damage instead of enhancing recovery [49][47]. Even with the controversy of the neuroprotective effect of HIF-1, beneficial characteristics appear to outweigh adverse effects. For this reason, use of HIF-1 activators can improve the evolution of cerebral ischemia patients [50].

Chronic Kidney Disease

Structure of Roxadustat
Structure of Roxadustat

Chronic Kidney Disease (CKD) is a long-term condition of gradual loss of kidney function over time, mainly caused by diabetes mellitus, hypertension or glomerulonephritis. One of the complications derived from reduced renal function is anemia, which increases its prevalence with the progression of the disease. IN CKD patients, development of anemia is mainly caused by decreased production of renal EPO, as well as other factors including iron deficiency, blood loss, reduce erythrocyte survival and inflammation. for this reason, HIF-1α stabilization through pharmacological inhibition of PHDs can induce EPO production on renal interstitial cells and improve iron homeostasis, which reverses anemia in these patients.

Recently, the PHD inhibitor roxadustat has been approved for the treatment of anemia associated with CKD in China and Japan [51]. Roxadustat is an antagonist of the PHD co-substrate 2-oxoglutarate that competitively targets PHD and reversibly inhibits its activity. Inhibition of PHD reduces HIF-a degradation and improves its transcriptional activity, leading to an induction of the expression of target genes involved in erythropoiesis, such as EPO, EPO receptor, proteins promoting iron absorption, iron transport and hemo synthesis.

3D structures of hypoxia-inducible factor

Authorship

This page has been equally constructed and edited by Gonzalo Garcia-Martin, Elsa Lucas Castro, Rocío Moreno Palomares and Carmen Paredes Yubero, students of the Biomedicine Master of the Universidad Autónoma de Madrid (Spain) under the supervision of Dr. Cristina Murga, as a contribution to the Molecular Pharmacology Course of the doctoral programme in Biosciences.

References

  1. ↑ Ke Q, Costa M. Hypoxia-inducible factor-1 (HIF-1). Mol Pharmacol. 2006 Nov;70(5):1469-80. doi: 10.1124/mol.106.027029. Epub 2006 Aug, 3. PMID:16887934 doi:http://dx.doi.org/10.1124/mol.106.027029
  2. ↑ Wu D, Potluri N, Lu J, Kim Y, Rastinejad F. Structural integration in hypoxia-inducible factors. Nature. 2015 Aug 5. doi: 10.1038/nature14883. PMID:26245371 doi:http://dx.doi.org/10.1038/nature14883
  3. ↑ Goldberg MA, Dunning SP, Bunn HF. Regulation of the erythropoietin gene: evidence that the oxygen sensor is a heme protein. Science. 1988 Dec 9;242(4884):1412-5. doi: 10.1126/science.2849206. PMID:2849206 doi:http://dx.doi.org/10.1126/science.2849206
  4. ↑ Semenza GL, Nejfelt MK, Chi SM, Antonarakis SE. Hypoxia-inducible nuclear factors bind to an enhancer element located 3' to the human erythropoietin gene. Proc Natl Acad Sci U S A. 1991 Jul 1;88(13):5680-4. doi: 10.1073/pnas.88.13.5680. PMID:2062846 doi:http://dx.doi.org/10.1073/pnas.88.13.5680
  5. ↑ Wang GL, Jiang BH, Rue EA, Semenza GL. Hypoxia-inducible factor 1 is a basic-helix-loop-helix-PAS heterodimer regulated by cellular O2 tension. Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5510-4. PMID:7539918
  6. ↑ Reyes H, Reisz-Porszasz S, Hankinson O. Identification of the Ah receptor nuclear translocator protein (Arnt) as a component of the DNA binding form of the Ah receptor. Science. 1992 May 22;256(5060):1193-5. PMID:1317062
  7. ↑ Dames SA, Martinez-Yamout M, De Guzman RN, Dyson HJ, Wright PE. Structural basis for Hif-1 alpha /CBP recognition in the cellular hypoxic response. Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5271-6. PMID:11959977 doi:http://dx.doi.org/10.1073/pnas.082121399
  8. ↑ Loboda A, Jozkowicz A, Dulak J. HIF-1 and HIF-2 transcription factors--similar but not identical. Mol Cells. 2010 May;29(5):435-42. doi: 10.1007/s10059-010-0067-2. Epub 2010 Apr, 12. PMID:20396958 doi:http://dx.doi.org/10.1007/s10059-010-0067-2
  9. ↑ Manalo DJ, Rowan A, Lavoie T, Natarajan L, Kelly BD, Ye SQ, Garcia JG, Semenza GL. Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1. Blood. 2005 Jan 15;105(2):659-69. doi: 10.1182/blood-2004-07-2958. Epub 2004 Sep , 16. PMID:15374877 doi:http://dx.doi.org/10.1182/blood-2004-07-2958
  10. ↑ Bruick RK, McKnight SL. A conserved family of prolyl-4-hydroxylases that modify HIF. Science. 2001 Nov 9;294(5545):1337-40. doi: 10.1126/science.1066373. Epub 2001, Oct 11. PMID:11598268 doi:http://dx.doi.org/10.1126/science.1066373
  11. ↑ Kamura T, Sato S, Iwai K, Czyzyk-Krzeska M, Conaway RC, Conaway JW. Activation of HIF1alpha ubiquitination by a reconstituted von Hippel-Lindau (VHL) tumor suppressor complex. Proc Natl Acad Sci U S A. 2000 Sep 12;97(19):10430-5. PMID:10973499 doi:http://dx.doi.org/10.1073/pnas.190332597
  12. ↑ Jeong JW, Bae MK, Ahn MY, Kim SH, Sohn TK, Bae MH, Yoo MA, Song EJ, Lee KJ, Kim KW. Regulation and destabilization of HIF-1alpha by ARD1-mediated acetylation. Cell. 2002 Nov 27;111(5):709-20. PMID:12464182
  13. ↑ Lando D, Peet DJ, Whelan DA, Gorman JJ, Whitelaw ML. Asparagine hydroxylation of the HIF transactivation domain a hypoxic switch. Science. 2002 Feb 1;295(5556):858-61. doi: 10.1126/science.1068592. PMID:11823643 doi:http://dx.doi.org/10.1126/science.1068592
  14. ↑ Richard DE, Berra E, Gothie E, Roux D, Pouyssegur J. p42/p44 mitogen-activated protein kinases phosphorylate hypoxia-inducible factor 1alpha (HIF-1alpha) and enhance the transcriptional activity of HIF-1. J Biol Chem. 1999 Nov 12;274(46):32631-7. doi: 10.1074/jbc.274.46.32631. PMID:10551817 doi:http://dx.doi.org/10.1074/jbc.274.46.32631
  15. ↑ 15.0 15.1 15.2 Davis CK, Jain SA, Bae ON, Majid A, Rajanikant GK. Hypoxia Mimetic Agents for Ischemic Stroke. Front Cell Dev Biol. 2019 Jan 8;6:175. doi: 10.3389/fcell.2018.00175. eCollection, 2018. PMID:30671433 doi:http://dx.doi.org/10.3389/fcell.2018.00175
  16. ↑ Zaman K, Ryu H, Hall D, O'Donovan K, Lin KI, Miller MP, Marquis JC, Baraban JM, Semenza GL, Ratan RR. Protection from oxidative stress-induced apoptosis in cortical neuronal cultures by iron chelators is associated with enhanced DNA binding of hypoxia-inducible factor-1 and ATF-1/CREB and increased expression of glycolytic enzymes, p21(waf1/cip1), and erythropoietin. J Neurosci. 1999 Nov 15;19(22):9821-30. PMID:10559391
  17. ↑ Demougeot C, Van Hoecke M, Bertrand N, Prigent-Tessier A, Mossiat C, Beley A, Marie C. Cytoprotective efficacy and mechanisms of the liposoluble iron chelator 2,2'-dipyridyl in the rat photothrombotic ischemic stroke model. J Pharmacol Exp Ther. 2004 Dec;311(3):1080-7. doi: 10.1124/jpet.104.072744. Epub , 2004 Jul 27. PMID:15280435 doi:http://dx.doi.org/10.1124/jpet.104.072744
  18. ↑ Nagel S, Papadakis M, Chen R, Hoyte LC, Brooks KJ, Gallichan D, Sibson NR, Pugh C, Buchan AM. Neuroprotection by dimethyloxalylglycine following permanent and transient focal cerebral ischemia in rats. J Cereb Blood Flow Metab. 2011 Jan;31(1):132-43. doi: 10.1038/jcbfm.2010.60. Epub, 2010 Apr 21. PMID:20407463 doi:http://dx.doi.org/10.1038/jcbfm.2010.60
  19. ↑ Reischl S, Li L, Walkinshaw G, Flippin LA, Marti HH, Kunze R. Inhibition of HIF prolyl-4-hydroxylases by FG-4497 reduces brain tissue injury and edema formation during ischemic stroke. PLoS One. 2014 Jan 7;9(1):e84767. doi: 10.1371/journal.pone.0084767. eCollection , 2014. PMID:24409307 doi:http://dx.doi.org/10.1371/journal.pone.0084767
  20. ↑ Davis CK, Nampoothiri SS, Rajanikant GK. Folic Acid Exerts Post-Ischemic Neuroprotection In Vitro Through HIF-1alpha Stabilization. Mol Neurobiol. 2018 Nov;55(11):8328-8345. doi: 10.1007/s12035-018-0982-3. Epub, 2018 Mar 14. PMID:29542054 doi:http://dx.doi.org/10.1007/s12035-018-0982-3
  21. ↑ Liu FJ, Kaur P, Karolina DS, Sepramaniam S, Armugam A, Wong PT, Jeyaseelan K. MiR-335 Regulates Hif-1alpha to Reduce Cell Death in Both Mouse Cell Line and Rat Ischemic Models. PLoS One. 2015 Jun 1;10(6):e0128432. doi: 10.1371/journal.pone.0128432., eCollection 2015. PMID:26030758 doi:http://dx.doi.org/10.1371/journal.pone.0128432
  22. ↑ Doeppner TR, Mlynarczuk-Bialy I, Kuckelkorn U, Kaltwasser B, Herz J, Hasan MR, Hermann DM, Bahr M. The novel proteasome inhibitor BSc2118 protects against cerebral ischaemia through HIF1A accumulation and enhanced angioneurogenesis. Brain. 2012 Nov;135(Pt 11):3282-97. doi: 10.1093/brain/aws269. PMID:23169919 doi:http://dx.doi.org/10.1093/brain/aws269
  23. ↑ Badawi Y, Shi H. Relative Contribution of Prolyl Hydroxylase-Dependent and -Independent Degradation of HIF-1alpha by Proteasomal Pathways in Cerebral Ischemia. Front Neurosci. 2017 May 17;11:239. doi: 10.3389/fnins.2017.00239. eCollection, 2017. PMID:28566998 doi:http://dx.doi.org/10.3389/fnins.2017.00239
  24. ↑ 24.0 24.1 Greenberger LM, Horak ID, Filpula D, Sapra P, Westergaard M, Frydenlund HF, Albaek C, Schroder H, Orum H. A RNA antagonist of hypoxia-inducible factor-1alpha, EZN-2968, inhibits tumor cell growth. Mol Cancer Ther. 2008 Nov;7(11):3598-608. doi: 10.1158/1535-7163.MCT-08-0510., Epub 2008 Oct 30. PMID:18974394 doi:http://dx.doi.org/10.1158/1535-7163.MCT-08-0510
  25. ↑ Patnaik A, Chiorean EG, Tolcher A, Papadopoulos K, Beeram M, Waddell DK, et al. EZN-2968, a novel hypoxia-inducible factor-1 (HIF-1) messenger ribonucleic acid (mRNA) antagonist: Results of a phase I, pharmacokinetic (PK), dose-escalation study of daily administration in patients (pts) with advanced malignancies. J Clin Oncol. 2009;27(15):2564–2564. doi: 10.1200/jco.2009.27.15_suppl.2564
  26. ↑ Jeong W, Rapisarda A, Park SR, Kinders RJ, Chen A, Melillo G, Turkbey B, Steinberg SM, Choyke P, Doroshow JH, Kummar S. Pilot trial of EZN-2968, an antisense oligonucleotide inhibitor of hypoxia-inducible factor-1 alpha (HIF-1alpha), in patients with refractory solid tumors. Cancer Chemother Pharmacol. 2014 Feb;73(2):343-8. doi: 10.1007/s00280-013-2362-z., Epub 2013 Nov 30. PMID:24292632 doi:http://dx.doi.org/10.1007/s00280-013-2362-z
  27. ↑ Rapisarda A, Uranchimeg B, Sordet O, Pommier Y, Shoemaker RH, Melillo G. Topoisomerase I-mediated inhibition of hypoxia-inducible factor 1: mechanism and therapeutic implications. Cancer Res. 2004 Feb 15;64(4):1475-82. doi: 10.1158/0008-5472.can-03-3139. PMID:14983893 doi:http://dx.doi.org/10.1158/0008-5472.can-03-3139
  28. ↑ Mabjeesh NJ, Escuin D, LaVallee TM, Pribluda VS, Swartz GM, Johnson MS, Willard MT, Zhong H, Simons JW, Giannakakou P. 2ME2 inhibits tumor growth and angiogenesis by disrupting microtubules and dysregulating HIF. Cancer Cell. 2003 Apr;3(4):363-75. doi: 10.1016/s1535-6108(03)00077-1. PMID:12726862 doi:http://dx.doi.org/10.1016/s1535-6108(03)00077-1
  29. ↑ Mabjeesh NJ, Escuin D, LaVallee TM, Pribluda VS, Swartz GM, Johnson MS, Willard MT, Zhong H, Simons JW, Giannakakou P. 2ME2 inhibits tumor growth and angiogenesis by disrupting microtubules and dysregulating HIF. Cancer Cell. 2003 Apr;3(4):363-75. doi: 10.1016/s1535-6108(03)00077-1. PMID:12726862 doi:http://dx.doi.org/10.1016/s1535-6108(03)00077-1
  30. ↑ Jaeger AM, Whitesell L. HSP90: Enabler of Cancer Adaptation. Annu Rev Cancer Biol. 2019;3:275–97. doi: https://doi.org/10.1146/annurev-cancerbio-030518-055533
  31. ↑ Turtoi A, Peixoto P, Castronovo V, Bellahcene A. Histone deacetylases and cancer-associated angiogenesis: current understanding of the biology and clinical perspectives. Crit Rev Oncog. 2015;20(1-2):119-37. doi: 10.1615/critrevoncog.2014012423. PMID:25746107 doi:http://dx.doi.org/10.1615/critrevoncog.2014012423
  32. ↑ Zhang C, Yang C, Feldman MJ, Wang H, Pang Y, Maggio DM, Zhu D, Nesvick CL, Dmitriev P, Bullova P, Chittiboina P, Brady RO, Pacak K, Zhuang Z. Vorinostat suppresses hypoxia signaling by modulating nuclear translocation of hypoxia inducible factor 1 alpha. Oncotarget. 2017 May 23;8(34):56110-56125. doi: 10.18632/oncotarget.18125., eCollection 2017 Aug 22. PMID:28915577 doi:http://dx.doi.org/10.18632/oncotarget.18125
  33. ↑ 33.0 33.1 Turtoi A, Peixoto P, Castronovo V, Bellahcene A. Histone deacetylases and cancer-associated angiogenesis: current understanding of the biology and clinical perspectives. Crit Rev Oncog. 2015;20(1-2):119-37. doi: 10.1615/critrevoncog.2014012423. PMID:25746107 doi:http://dx.doi.org/10.1615/critrevoncog.2014012423
  34. ↑ Lee K, Zhang H, Qian DZ, Rey S, Liu JO, Semenza GL. Acriflavine inhibits HIF-1 dimerization, tumor growth, and vascularization. Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17910-5. doi:, 10.1073/pnas.0909353106. Epub 2009 Oct 1. PMID:19805192 doi:http://dx.doi.org/10.1073/pnas.0909353106
  35. ↑ Mangraviti A, Raghavan T, Volpin F, Skuli N, Gullotti D, Zhou J, Asnaghi L, Sankey E, Liu A, Wang Y, Lee DH, Gorelick N, Serra R, Peters M, Schriefer D, Delaspre F, Rodriguez FJ, Eberhart CG, Brem H, Olivi A, Tyler B. HIF-1alpha- Targeting Acriflavine Provides Long Term Survival and Radiological Tumor Response in Brain Cancer Therapy. Sci Rep. 2017 Nov 2;7(1):14978. doi: 10.1038/s41598-017-14990-w. PMID:29097800 doi:http://dx.doi.org/10.1038/s41598-017-14990-w
  36. ↑ Zhang H, Qian DZ, Tan YS, Lee K, Gao P, Ren YR, Rey S, Hammers H, Chang D, Pili R, Dang CV, Liu JO, Semenza GL. Digoxin and other cardiac glycosides inhibit HIF-1alpha synthesis and block tumor growth. Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19579-86. doi:, 10.1073/pnas.0809763105. Epub 2008 Nov 19. PMID:19020076 doi:http://dx.doi.org/10.1073/pnas.0809763105
  37. ↑ Yoshida T, Zhang H, Iwase T, Shen J, Semenza GL, Campochiaro PA. Digoxin inhibits retinal ischemia-induced HIF-1alpha expression and ocular neovascularization. FASEB J. 2010 Jun;24(6):1759-67. doi: 10.1096/fj.09-145664. Epub 2010 Jan 11. PMID:20065104 doi:http://dx.doi.org/10.1096/fj.09-145664
  38. ↑ Reece KM, Richardson ED, Cook KM, Campbell TJ, Pisle ST, Holly AJ, Venzon DJ, Liewehr DJ, Chau CH, Price DK, Figg WD. Epidithiodiketopiperazines (ETPs) exhibit in vitro antiangiogenic and in vivo antitumor activity by disrupting the HIF-1alpha/p300 complex in a preclinical model of prostate cancer. Mol Cancer. 2014 Apr 28;13:91. doi: 10.1186/1476-4598-13-91. PMID:24775564 doi:http://dx.doi.org/10.1186/1476-4598-13-91
  39. ↑ Befani CD, Vlachostergios PJ, Hatzidaki E, Patrikidou A, Bonanou S, Simos G, Papandreou CN, Liakos P. Bortezomib represses HIF-1alpha protein expression and nuclear accumulation by inhibiting both PI3K/Akt/TOR and MAPK pathways in prostate cancer cells. J Mol Med (Berl). 2012 Jan;90(1):45-54. doi: 10.1007/s00109-011-0805-8. Epub 2011, Sep 10. PMID:21909688 doi:http://dx.doi.org/10.1007/s00109-011-0805-8
  40. ↑ 40.0 40.1 Kong D, Park EJ, Stephen AG, Calvani M, Cardellina JH, Monks A, Fisher RJ, Shoemaker RH, Melillo G. Echinomycin, a small-molecule inhibitor of hypoxia-inducible factor-1 DNA-binding activity. Cancer Res. 2005 Oct 1;65(19):9047-55. doi: 10.1158/0008-5472.CAN-05-1235. PMID:16204079 doi:http://dx.doi.org/10.1158/0008-5472.CAN-05-1235
  41. ↑ Hockel M, Vaupel P. Tumor hypoxia: definitions and current clinical, biologic, and molecular aspects. J Natl Cancer Inst. 2001 Feb 21;93(4):266-76. doi: 10.1093/jnci/93.4.266. PMID:11181773 doi:http://dx.doi.org/10.1093/jnci/93.4.266
  42. ↑ WARBURG O. On respiratory impairment in cancer cells. Science. 1956 Aug 10;124(3215):269-70. PMID:13351639
  43. ↑ Wallace EM, Rizzi JP, Han G, Wehn PM, Cao Z, Du X, Cheng T, Czerwinski RM, Dixon DD, Goggin BS, Grina JA, Halfmann MM, Maddie MA, Olive SR, Schlachter ST, Tan H, Wang B, Wang K, Xie S, Xu R, Yang H, Josey JA. A Small-Molecule Antagonist of HIF2alpha Is Efficacious in Preclinical Models of Renal Cell Carcinoma. Cancer Res. 2016 Sep 15;76(18):5491-500. doi: 10.1158/0008-5472.CAN-16-0473. Epub, 2016 Sep 6. PMID:27635045 doi:http://dx.doi.org/10.1158/0008-5472.CAN-16-0473
  44. ↑ Courtney KD, Infante JR, Lam ET, Figlin RA, Rini BI, Brugarolas J, Zojwalla NJ, Lowe AM, Wang K, Wallace EM, Josey JA, Choueiri TK. Phase I Dose-Escalation Trial of PT2385, a First-in-Class Hypoxia-Inducible Factor-2alpha Antagonist in Patients With Previously Treated Advanced Clear Cell Renal Cell Carcinoma. J Clin Oncol. 2018 Mar 20;36(9):867-874. doi: 10.1200/JCO.2017.74.2627. Epub 2017, Dec 19. PMID:29257710 doi:http://dx.doi.org/10.1200/JCO.2017.74.2627
  45. ↑ Xu R, Wang K, Rizzi JP, Huang H, Grina JA, Schlachter ST, Wang B, Wehn PM, Yang H, Dixon DD, Czerwinski RM, Du X, Ged EL, Han G, Tan H, Wong T, Xie S, Josey JA, Wallace EM. 3-[(1S,2S,3R)-2,3-Difluoro-1-hydroxy-7-methylsulfonylindan-4-yl]oxy-5-fluorobenzo nitrile (PT2977), a Hypoxia-Inducible Factor 2alpha (HIF-2alpha) Inhibitor for the Treatment of Clear Cell Renal Cell Carcinoma. J Med Chem. 2019 Aug 8;62(15):6876-6893. doi: 10.1021/acs.jmedchem.9b00719. Epub , 2019 Jul 8. PMID:31282155 doi:http://dx.doi.org/10.1021/acs.jmedchem.9b00719
  46. ↑ Xu R, Wang K, Rizzi JP, Huang H, Grina JA, Schlachter ST, Wang B, Wehn PM, Yang H, Dixon DD, Czerwinski RM, Du X, Ged EL, Han G, Tan H, Wong T, Xie S, Josey JA, Wallace EM. 3-[(1S,2S,3R)-2,3-Difluoro-1-hydroxy-7-methylsulfonylindan-4-yl]oxy-5-fluorobenzo nitrile (PT2977), a Hypoxia-Inducible Factor 2alpha (HIF-2alpha) Inhibitor for the Treatment of Clear Cell Renal Cell Carcinoma. J Med Chem. 2019 Aug 8;62(15):6876-6893. doi: 10.1021/acs.jmedchem.9b00719. Epub , 2019 Jul 8. PMID:31282155 doi:http://dx.doi.org/10.1021/acs.jmedchem.9b00719
  47. ↑ 47.0 47.1 Davis CK, Jain SA, Bae ON, Majid A, Rajanikant GK. Hypoxia Mimetic Agents for Ischemic Stroke. Front Cell Dev Biol. 2019 Jan 8;6:175. doi: 10.3389/fcell.2018.00175. eCollection, 2018. PMID:30671433 doi:http://dx.doi.org/10.3389/fcell.2018.00175
  48. ↑ Zhang Z, Yao L, Yang J, Wang Z, Du G. PI3K/Akt and HIF1 signaling pathway in hypoxiaischemia (Review). Mol Med Rep. 2018 Oct;18(4):3547-3554. doi: 10.3892/mmr.2018.9375. Epub 2018 Aug , 9. PMID:30106145 doi:http://dx.doi.org/10.3892/mmr.2018.9375
  49. ↑ Liu FJ, Kaur P, Karolina DS, Sepramaniam S, Armugam A, Wong PT, Jeyaseelan K. MiR-335 Regulates Hif-1alpha to Reduce Cell Death in Both Mouse Cell Line and Rat Ischemic Models. PLoS One. 2015 Jun 1;10(6):e0128432. doi: 10.1371/journal.pone.0128432., eCollection 2015. PMID:26030758 doi:http://dx.doi.org/10.1371/journal.pone.0128432
  50. ↑ Cerebral Ischemia, Weill Cornell Brain and Spine Center https://weillcornellbrainandspine.org/condition/ischemia-cerebral
  51. ↑ Chen N, Hao C, Peng X, Lin H, Yin A, Hao L, Tao Y, Liang X, Liu Z, Xing C, Chen J, Luo L, Zuo L, Liao Y, Liu BC, Leong R, Wang C, Liu C, Neff T, Szczech L, Yu KP. Roxadustat for Anemia in Patients with Kidney Disease Not Receiving Dialysis. N Engl J Med. 2019 Sep 12;381(11):1001-1010. doi: 10.1056/NEJMoa1813599. Epub, 2019 Jul 24. PMID:31340089 doi:http://dx.doi.org/10.1056/NEJMoa1813599
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