Green Fluorescent Protein 3D structures

3D structures of Green Fluorescent Protein

(Updated on 30-July-2025)

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• Green Fluorescent Protein from jellyfish
  • 2h9w, 2qu1, 4pfe, 4tzg, 4xow, 5bt0, 5btt, 5dtx, 5dtz, 5dy6, 5jzk, 5jzl, 5nhn, 5o89, 5t3i, 5wwk, 6as9, 6pfr, 6pfs, 6pft, 6pfu, 6qq8, 6qq9, 6qqa, 6qqb, 6t39, 6t3a, 7a7k, 7a7l, 7a7s, 7a7t, 7a7u, 7a7x, 8aha 8ahb, 8am4, 8xh0 – jGFP - jellyfish
    
  • 1b9c, 1c4f, 1cv7, 1ema, 1emb, 1emc, 1eme, 1emf, 1emk, 1eml, 1emm, 1gfl, 1h6r, 1hcj, 1jby, 1jbz, 1jc0, 1jc1, 1kp5, 1kyp, 1qst, 1q4a, 1q4b, 1q4c, 1q4d, 1q4e, 1q73, 1qxt, 1qy3, 1qyf, 1qyo, 1qyq, 1s6z, 1yhi, 1yj2, 1yhg, 1yhh, 1yjf, 1z1p, 1z1q, 2ah8, 2aha, 2awj, 2awk, 2awl, 2awm, 2due, 2duf, 2dug, 2duh, 2dui, 2emd, 2emn, 2emo, 2fwq, 2fzu, 2g16, 2g2s, 2g3d, 2g5z, 2g6e, 2gj2, 2hcg, 2hfc, 2hgd, 2hgy, 2hjo, 2hqz, 2hrs, 2okw, 2oky, 2q57, 2qrf, 2qt2, 2qz0, 2wur, 2y0g, 3cb9, 3cbe, 3cd1, 3cd9, 3gex, 3gj1, 3gj2, 3i19, 3la1, 3p28, 3sry, 3ssp, 3st0, 3ufz, 3ug0, 4eul, 4ges, 4j88, 4j89, 4j8a, 3w1c, 3w1d, 4h47, 4h48, 4jfg, 4lw5, 4ka9, 4kag, 4kex, 4l12, 4l13, 4l1i, 4n3d, 4ogs, 4p1q, 5dpg, 5dph, 5dpi, 5dpj, 5ehu, 5hbd, 5hge, 5hw9, 5hzo, 5mse, 5n9o, 5ni3, 5o8a, 5o8b, 5o8c, 5wj2, 5wj3, 5wj4, 5yr2, 6aa2, 6aa6, 6b7t, 6b7r, 6dq1, 6fll, 6fww, 6go8, 6go9, 6gqg, 6gqh, 6grm, 6hut, 6ir6, 6ir7, 6jgh, 6jgi, 6jgj, 6kkz, 6kl0, 6kl1, 6krg, 6l27, 6quh, 6qui, 6quj, 6uhj, 6uhk, 6uhl, 6uhm, 6uhn, 6uho, 6uhp, 6uhq, 6uhr, 6un4, 6un5, 6vio, 6zsm, 6zsn, 7a7m, 7a7o, 7a7p, 7a7q, 7a7r, 7a7v, 7a7w, 7a7y, 7a7z, 7a80, 7a81, 7a82, 7a83, 7a84, 7a85, 7a86, 7a87, 7a88, 7a89, 7a8a, 7a8b, 7a8c, 7a8d, 7a8e, 7a8f, 7a8g, 7a8i, 7a8j, 7a8k, 7a8l, 7a8n, 7a8o, 7amb, 7amf, 7amu, 7o7c, 7o7d, 7o7e, 7o7h, 7o7u, 7o7v, 7o7w, 7o7x, 8bxp, 8c1x, 8dhr, 8dta, 8iyy, 8iyz, 8iz1, 8iz2, 8iz3, 8jkc, 8jkg, 8jki, 8jl2, 8jl5, 8jl6, 8jl7, 8jll, 8jlm, 8jls, 8jlt, 8jlu, 8qwj, 8zup, 8zuq, 8zur, 8zus, 8zut, 9c74 – jGFP (mutant)
    
  • 6mdr – jGFP (mutant) – Cryo EM
    
  • 3evp, 4zf3, 4zf4, 4zf5, 5f9g, 6ofk, 6ofl, 6ofm, 6ofn, 6ofo, 6og8, 6og9, 6oga, 6ogb, 6ogc, 6un6, 6un7 – jGFP circular permutation
    
  • 4xov, 5dty, 5du0, 6h01 – jGFP non-fluorescent
    
  • 1rm9, 1rmm, 1rmo, 1rmp, 1rrz – jGFP containing fluorotryptophan
    
  • 6sm0 - jGFP containing azidoPhe
    
  • 2h6v, 5j3n – jGFP+imidazole derivative
    
  • 1emg, 1w7s, 1w7t, 1w7u 2o24, 2o29, 2o2b - jGFP (mutant)+imidazole derivative
    
  • 1kyr – jGFP (mutant)+imidazole derivative+Cu
    
  • 1kys – jGFP (mutant)+imidazole derivative+Zn
    
  • 3ss0, 3ssh, 3ssk, 3ssl, 3sst, 3ssv, 3ssy, 3sv5, 3svb, 3svc, 3svd, 3sve – jGFP (mutant)+imidazole derivative+ halide
    
  • 4gf6 - jGFP (mutant) +Cu
    
  • 3g9a, 3k1k, 3ogo, 6lr7, 6lz2, 6xzf, 7cz0, 7e53, 7sah, 7sai – jGFP + nanobody
    
  • 8rlb, 8rle – jGFP + gluebody – Cryo EM
    
  • 8rlc – jGFP + gluebody + SPNS2 – Cryo EM
    
  • 8rl9 – jGFP + gluebody + DNA helicase – Cryo EM
    
  • 4xl5, 4xvp – jGFP (mutant) + BGFP
    
  • 5mfc – jGFP + armadillo repeat protein
    
  • 5mak – jGFP + R7
    
  • 5ma3, 5ma9 – jGFP + R11
    
  • 5ma4 – jGFP + K7
    
  • 5ma5 – jGFP + K11
    
  • 5mad – jGFP + 3G61
    
  • 6mwq, 9irv – jGFP + darpin – Cryo EM
    
  • 9j48 – jGFP + darpin + ferritin – Cryo EM
    
  • 5ma6, 5ma8 – jGFP + 3G124NC
    
  • 5lel, 5lem – jGFP + MBP + 3G124
    
  • 5wts – jGFP + MDM2
    
  • 8a6g, 8a6n, 8a6o, 8a6p, 8a6q, 8a6r, 8a6s, 8a83 – jGFP + chromophore
    
• Green Fluorescent Protein from other organisms
  • 2qle – GFP (mutant) – Azotobacter vinelandii
    
  • 2rh7 – GFP – Renilla reniformis
    
  • 3adf – monomeric azami green – Galaxea fascicularis
    
  • 2vzx, 5exb, 7dig – DeGFP – Dendronephthya
    
  • 2gw3 – GFP KAEDE – Trachiphyllia geoffroyi
    
  • 2gx0, 2gx2, 2ie2, 2iov, 2pox – EchFP Dronpa2 – Echinophyllia
    
  • 6d38, 6d39, 6nqj, 6nqk, 6nql, 6nqq, 6nqr, 6nqs, 6nqv - EchFP Dronpa2 (mutant)
    
  • 2dd7 – CpGFP - Chiridius poppei
    
  • 2dd9 – CpGFP (mutant)
    
  • 2c9i – saGFP – sea anemone
    
  • 1xmz – saGFP (mutant)
    
  • 2c9j – GFP – Cerianthus membranaceus
    
  • 2hpw – GFP – Clytia gregaria
    
  • 2g3o – PpGFP – Pontellina plumata
    
  • 2g6x, 2g6y – PpGFP (mutant)
    
  • 3lva, 3lvc, 3lvd – GFP (mutant) – Aequoarea coerulescens
    
  • 4dkm, 4dkn – GFP – Florida lancelet
    
  • 4hvf – clGFP N terminal (mutant) – common lancelet
    
  • 4dxi, 4dxm, 4tza, 5aqb, 8ill, 8tjh – GFP – synthetic
    
  • 5y00, 5y01, 6j1a, 6jxf – OfGFP – Olindia formosa
    
  • 6j1b, 6j1c – OfRFP (mutant)
    
  • 4jc2 – GFP – soft coral
    
  • 6l26 – GFP – Nicotiana benthamiana
    
  • 7lg4 – GFP – Aequorea macrodactyla
    
  • 6s67 – GFP – Aequorea australis
    
  • 6m9x, 6m9y, 6m9z – GFP – Branchiostoma floridae
    
  • 4i3b – JeGFP – Japanese eel
    
  • 4i3d – JeGFP (mutant)
    
  • 8u20, 8u21, 8u22, 8u23, 8u24 – GFP (mutant) – Corynactis californica
    
• Bright green fluorescent protein
  • 7y40, 7yao, 8yq4 – CuGFP – Cytaeis uchidaeItalic text
    
  • 7yre, 8gyf, 8j2h, 8j2i, 8j2j, 8j2k, 8j2l, 8j3j – CuGFP (mutant)
    
  • 8ilk, 8ill – sGFP
• Split green fluorescent protein
  • 8i4o – GFP + beta-amyloid – Bacteria latreille
    
• Yellow fluorescent protein
  • 1huy, 1myw, 1yfp, 2yfp, 3dpw, 3dpx, 3dpz, 3dq1, 3dq2, 3dq3, 3dq4, 3dq5, 3dq6, 3dq7, 3dq8, 3dq9, 3dqa, 3dqc, 3dqd, 3dqe, 3dqf, 3dqh, 3dqi, 3dqj, 3dqk, 3dql, 3dqm, 3dqn, 3dqo, 3dqu, 3ed8, 3v3d – jGFP (mutant)
    
  • 1f09, 1f0b – jGFP (mutant)+imidazole derivative+I
    
  • 2ogr – Z-FP - Zoanthus
    
  • 1xa9, 1xae, 2pxs, 2pxw – Z-FP (mutant)
    
  • 2jad – jGFP/glutaredoxin
    
  • 5ltq – clRFP
    
• Yellow-green fluorescent protein
  • 5ltp, 5ltr – clRFP
    
• Red fluorescent protein or mCherry
  • 2icr, 2ojk – Z-RFP
    
  • 2fl1 – Z-RFP (mutant)
    
  • 1uis, 3bx9, 3bxa, 3bxb, 3bxc, 3e5t, 3e5w, 3ip2, 3pib, 3pj5, 3pj7, 3pjb, 6xwy - EnRFP – Entacmaea quadricolor
    
  • 3e5v, 3rwa, 3rwt – EnRFP (mutant)
    
  • 1ggx, 1zgo, 2h5o, 2h5p, 2h5q, 2h5r, 2vad, 2vae, 3ned, 3nez, 3nf0, 4zin, 4zio, 5fhv, 6ylm – DiRFP – Discosoma
    
  • 1g7k, 1zgp, 1zgq, 2h8q, 2v4e, 6mz3 – DiRFP (mutant)
    
  • 6b0b, 6bbo – DiRFP + APOBEC3H + RNA
    
  • 6wqk – DiRFP/hnRNPA2 – Cryo EM
    
  • 6v00, 6v01 – DiRFP/KCNQ3 + KCNQ1 + Cam-1 – Cryo EM
    
  • 3cfa – AsRFP – Anemonia sulcata
    
  • 3nt3, 3nt9 – RFP – artificial gene
    
  • 1yzw – RFP – Heteractis
    
  • 3ir8 – RFP – Montipora
    
  • 8k9q, 8k9r, 8k9t – RFP/GPI inositol deacylae
    
  • 4edo, 4eds – GFP – Entacmaea quadricolor
    
  • 3u8a, 3u8c, 4kge, 4kgf, 4gob, 8xh1, 8xh2 – GFP - synthetic
    
  • 5exc – DeGFP
    
  • 6ir1, 6ir2 – GFP + nanobody – Anaplasma marginale
    
• Cyan fluorescent protein
  • 2wsn, 2wso, 2ydz, 5ox8, 5ox9 - jGFP
    
  • 2ye0, 2ye1, 3ztf, 4ar7, 4as8, 4b5y, 5j2o - jGFP (mutant)
    
  • 5dqb, 5dqm, 5drf, 5drg – GFP – belt jellyfish
    
  • 2otb – cyan C-FP – Clavularia
    
  • 2ote - cyan C-FP (mutant)
    
  • 2zo6, 2zo7 – cyan FP – Fungia concinna
    
  • 1oxd, 1oxe, 1oxf – cyan FP (mutant) – marker plasmid
    
  • 7z7o, 7z7p – GFP – amphioxus
    
  • 7z7q – GFP – Branchiostoma lancelatum
    
• Blue fluorescent protein
  • 1bfp, 4orn – jGFP (mutant)
    
  • 4en1 – jGFP
    
  • 6jc5, 6jc6 – GFP – Stichodactyla haddoni
    
  • 6j7h – GFP – uncultured
    
• Cerulean fluorescent protein
  • 5oxc, 6yln – GFP (mutant) – vaccinia virus
    
  • 5oxa, 5oxb – jGFP (mutant)
    
• Emerald fluorescent protein
  • 4kw4, 4kw8, 4kw9 – jGFP (mutant)
    
• Superfolder green fluorescent protein
  • 5b61, 5z6y, 6oa8, 7km4, 7pca, 7pcz, 7pd0, 7ugt, 7yeu – jGFP
    
  • 2b3p, 2b3q, 2q6p, 4lqt, 4lqu, 4w6b, 6b9c, 6dq0, 7ugs, 8dpd, 8ovy – jGFP (mutant)
    
  • 5dy6 – jGFP + peptide derived chromophore + triazole derivative
    
  • 6nhv, 9f22, 9f23, 9f24 – jGFP + darpin
    
  • 8dmb – jGFP/Smt3 + RNA + DNA
    
• Superfolder yellow fluorescent protein
  • 7ugr – jGFP
    
  • 3ed8 – jGFP (mutant)
    
• Fluorescent Photoconvertible protein
  • 2vvh, 2vvi, 2vvj, 3p8u – LhGFP (mutant) – Lobophyllia hemprichii
    
  • 1zux, 6goz, 6gp0, 6gp1, 6yls – LhGFP
    
  • 2btj - LhGFP+imidazole derivative
    
  • 1xss, 2ddc – FfFP – Favia favus
    
  • 2ddd - FfFP (mutant)
    
  • 3cff, 3cfh – AsGFP (mutant)
• Green fluorescent protein chimera
  • 3ai4 – jGFP/mPolymerase iota ubiquitin binding motif - mouse
    
  • 3ai5, 3vht - jGFP/m ubiquitin
    
  • 4i2y, 6hr1 - jGFP/myosin light chain
    
  • 3ek4, 3ek7, 3o77, 3o78 - jGFP/myosin light chain kinase/calmodulin
    
  • 4anj - jGFP/myosin light chain kinase + calmodulin
    
  • 3evr, 3evu, 3evv - jGFP/myosin light chain kinase/calmodulin+Ca
    
  • 3ek8, 3ekh, 3ekj, 3sg2, 3sg3, 3sg4, 3sg5, 3sg6, 3sg7, 3wlc, 3wld - jGFP/myosin light chain kinase/calmodulin (mutant)
    
  • 4p7h, 4pa0 - jGFP/myosin heavy chain
    
  • 4rh7 - jGFP/dynein 2 heavy chain
    
  • 3osq, 3osr – jGFP/maltose-binding protein
    
  • 3u8p, 8k4s – jGFP/cytochrome b562/GQ + agonist – Cryo EM
    
  • 8kex – jGFP/cytochrome b562
    
  • 7zje – jGFP/TRPV2 – Cryo EM
    
  • 8t1b – jGFP/TRPV4 – Cryo EM
    
  • 8t1d, 8t1e – jGFP/TRPV4 + agonist – Cryo EM
    
  • 8jqr, 8t1f, 8x94 – jGFP/TRPV4 + antagonist – Cryo EM
    
  • 8t1c – jGFP/TRPV4 + RhoA – Cryo EM
    
  • 7y96 – jGFP/M protein
    
  • 9bcf – jGFP/parvalbumin
    
  • 8b6t – jGFP/haloalkane dehalogenase
    
  • 8b6s – jGFP/haloalkane dehalogenase + chloroalkane
    
  • 7y96 – jGFP/M protein
    
  • 9ebw, 9ebx – jGFP/TlpC + lactate
    
  • 4u2v, 5ktg – jGFP/Bcl-2
    
  • 4jrb – jGFP/allergen BLA
    
  • 4bdu – jGFP/apoptosis regulator BAX
    
  • 4ik1, 4ik3, 4ik4, 4ik5, 4ik8, 4ik9 – jGFP/Rcamp
    
  • 5fgu – jGFP/streptodornase D
    
  • 4xgy – jGFP/antibody
    
  • 7bwn – jGFP (mutant)/p53
    
  • 6efr – jGFP/nicotine biosensor
    
  • 6gel, 6gez – jGFP/calcium sensor
    
  • 6zui – jGFP/transcriptional repressor
    
  • 7cd7, 7cd8 – jGFP/GFP-40
    
  • 6wvg – jGFP/CD53
    
  • 6wrf, 6wsg – jGFP/ClpX-ClpP
    
  • 6w1z, 6w20, 6w21, 6w22, 6w23, 6w24 – jGFP/ClpA – Cryo EM
    
  • 6lnp – jGFP/CitA
    
  • 6wve – jGFP/SPCS1
    
  • 6wvf – jGFP/DsbB
    
  • 6wvd – jGFP/JAGN1
    
  • 6zqo – jGFP/G protein
    
  • 7ks0, 7ks3 – jGFP/GluK5 + GluK2 – Cryo EM
    
  • 6wv9, 6wva, 6wvi – jGFP/VKOR
    
  • 6wv5, 6wv8 – jGFP/VKOR (mutant) + vitamin K1
    
  • 6wv3, 6wv6, 6wv7, 6wvb, 6wvh – jGFP/VKOR + anticoagulant
    
  • 6wv4 – jGFP/VKOR (mutant) + anticoagulant
    
  • 6mks – jGFP/NLRcard – Cryo EM
    
  • 6mb2 – jGFP/AIM2 – Cryo EM
    
  • 8vdo, 8vdp, 8vdq, 8vdr – jGFP/talin-1 – Cryo EM
    
  • 7sqy – jGFP/CSDAV – Cryo EM
    
  • 8x9p – jGFP/HURP + tubulin
    
  • 9fqt – jGFP/CAT1 + Gp70 – Cryo EM
    
  • 9fqu, 9fqw – jGFP/CAT1 + Gp70 + Arg – Cryo EM
    
  • 9fqv – jGFP/CAT1 + Gp70 + Lys – Cryo EM
    
  • 8w2l – jGFP/TRPM7 + drug – Cryo EM
    
  • 8xty – jGFP/ACh transporter/antibody – Cryo EM
    
  • 7ydq – jGFP/nucleoside transporter – Cryo EM
    
  • 8xtw, 8xtx – jGFP/vesicular acetylcholine transporter – Cryo EM
    
  • 9fbu – jGFP/periplasmic binding transport protein
    
  • 8fck, 9na8, 9na9 – jGFP/augmin – Cryo EM
    
  • 8y8v – jGFP/aquaporin 7 – Cryo EM
    
  • 9j97, 9j98 – jGFP/XPR1 – Cryo EM
    
  • 8j6m, 8j6o – jGFP/SID1
    
  • 8ubg – jGFP/DPHF19 – Cryo EM
    
  • 8gw6, 8gw7, 8j0j, 8j1e – jGFP/SLAC1 – Cryo EM
    
  • 8jzu – jGFP/SLC15A + TSLAA – Cryo EM
    
  • 9f6y – jGFP/ELK-1 + Med23 – Cryo EM
    
  • 8pko – jGFP/mannosidase + PDI – Cryo EM
    
  • 7v7z, 7v80, 7v81, 7v82, 7v83, 7v84, 7v85, 7v86, 8xal – jGFP/ACE2 + spike glycoprotein – Cryo EM
    
  • 6itc – jGFP/translocase + nanobody – Cryo EM
    
  • 6uz3, 7xm9, 7xmf, 7xmg, 8j7f, 8t6l – jGFP/sodium channel – Cryo EM
    
  • 8j7m – jGFP/voltage dependent ion channel – Cryo EM
    
  • 7k18 – jGFP/sodium channel + toxin – Cryo EM
    
  • 6uz0, 8f6p – jGFP/sodium channel + drug – Cryo EM
    
  • 7ssx, 7ssy – jGFP/potassium channel – Cryo EM
    
  • 7ssv – jGFP/potassium channel + antibody – Cryo EM
    
  • 7ssz, 8dfl – jGFP/potassium channel + nanobody – Cryo EM
    
  • 8wg3, 8wg4 – jGFP/TMEM63B channel – Cryo EM
    
  • 7sjd, 7zjd, 7zji – jGFP/receptor potential cation channel – Cryo EM
    
  • 6val, 6vam – jGFP/Calhm – Cryo EM
    
  • 7byl – jGFP/KCNQ4 – Cryo EM
    
  • 7bym, 7byn – jGFP/KCNQ4 + drug – Cryo EM
    
  • 5bkf, 7l31, 8dn3 – jGFP/glycine receptor – Cryo EM
    
  • 8dn2, 8dn4, 8dn5, 9boy, 9boz, 9bp0, 9bp7 – jGFP/glycine receptor + Gly – Cryo EM
    
  • 9f33, 9f34 – jGFP/dopamine receptor + scFv + G proteins – Cryo EM
    
  • 9ge2 – jGFP/G protein coupled receptor + scFv + G proteins – Cryo EM
    
  • 7eeb – jGFP/catspermasome – Cryo EM
    
  • 6yov, 8ots – jGFP/nucleosome – Cryo EM
    
  • 7sx3, 7sx4 – jGFP/channelosome – Cryo EM
    
  • 7rfp – jGFP/TNFR + antibody – Cryo EM
    
  • 8tlm – jGFP/chemokine receptor + antibody – Cryo EM
    
  • 8jf7 – jGFP/glutamate receptor + antibody – Cryo EM
    
  • 9gu2, 9gu3 – jGFP/AChR + antibody – Cryo EM
    
  • 9gu0, 9gu1 – jGFP/AChR + bungarotoxin + antibody – Cryo EM
    
  • 4z4k – jGFP/TAX1-binding protein – Cryo EM
    
  • 4z4m – jGFP/TAX1-binding protein
    
  • 7vcm – jGFP/potassium-binding protein
    
  • 8tu9 – jGFP/HGSNAT + acetyl CoA – Cryo EM
    
  • 8et3 – jGFP in delivery complex – Cryo EM
    
  • 8fed – jGFP in MCE1-LUCB complex – Cryo EM
    
  • 8fee, 8fef – jGFP in MCE1 complex – Cryo EM
    
  • 8ya0, 8ya2 – jGFP in SecA-SecY complex – Cryo EM
    
  • 8ban, 8bav – jGFP/Snap-25 + secretagogin
    
  • 8bbj – jGFP/syntaxin-4 + secretagogin
    

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Michal Harel, Jaime Prilusky