DNA polymerase 3D structures
From Proteopedia
Revision as of 10:04, 19 July 2020 by Michal Harel (talk | contribs)
3D Structures of DNA polymerase
Updated on 19-July-2020
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- DNA polymerase I
- 1taq – TaDpo I - Thermus aquaticus
- 1jxe – TaDpo I Stoffel fragment 290-832
- 5ktq – TaDpo I Stoffel fragment + nucleotide
- 5szt, 5e41, 6q4v, 6q4u, 6fbi, 6fbh, 6fbg, 6fbf, 6fbe, 6fbd, 6fbc, 5z3n, 5yth, 5ytg, 5ytf, 5yte, 5ytd, 5ytc, 5w6k, 5w6q – TaDpo I Stoffel fragment + DNA + nucleotide derivative
- 5nkl – TaDpo I + DNA + pyridine derivative + pyrrol derivative
- 5o7t – TaDpo I (mutant) + DNA + CTP derivative
- 5oxj – TaDpo I + DNA + GMP derivative + imidazole derivative
- 3ojs, 3oju, 1tau, 4dle, 4dlg, 4elt, 4elu, 4elv - TaDpo I + DNA
- 4flt, 4flu, 4flv, 4flw, 4flx, 4fly, 4flz, 4fm0, 4fm1, 4fm2 – Dpo I + DNA – Pyrococcus abyssi
- 1s5j – SsDpo I - Sulfolobus solfataricus
- 6dsy, 6dsx, 6dsw, 6dsv, 6dsu - GsDpo I + DNA - Geobacillus stearothermophilus
- 3eyz, 6p5c - GsDpo I (mutant) + DNA
- 6mu5, 6mu4, 6ur2, 6ur4 - GsDpo I + DNA + nucleotide derivative
- 3eyz - GsDpo I (mutant) + DNA
- 3ez5, 6ur9, 6us5 - GsDpo I (mutant) + DNA + nucleotide
- 3pv8, 3px0, 3px4, 3px6, 4dqi, 4dqp, 4dqq, 4dqr, 4dqs, 4ds4, 4ds5, 4dse, 4dsf, 4e0d, 4ez6, 4ez9, 4f2r, 4f2s, 4f3o, 4f4k, 4f8r - GkDpo I (mutant) + DNA – Geobacillus kaustophilus
- 6vdc, 6vde – MsPol I – Mycobacterium smegmatis
- 6vdd - MsDpo I + DNA + nucleotide derivative
- 1taq – TaDpo I - Thermus aquaticus
- DNA polymerase I klenow fragment
- 2kzz, 1d8y, 2kzm – EcDpo I - Escherichia coli
- 1qsl - EcDpo I + DNA
- 1kfd, 1dpi - EcDpo I + nucleotide
- 1d9d, 1d9f, 2kfn - EcDpo I + DNA + nucleotide
- 1ktq - TaDpo I
- 3po4, 3po5, 3rtv, 3sv3, 3sv4, 3syz, 3sz2, 4c8k, 4c8l, 4c8m, 4c8n, 4c8o, 4cch - TaDpo I + DNA
- 4bwm, 4bwj - TaDpo I + DNA + RNA
- 2xo7, 3hp6, 3hpo, 2hhq, 2hhs, 2hht, 2hhu, 2hhv, 2hhw, 2hhx, 2hvh, 2hvi, 2hw3, 1xc9, 1ua0, 1ua1, 1njw, 1njx, 1njy, 1njz, 1nk0, 1nk4, 1nk5, 1nk6, 1nk7, 1nk8, 1nk9, 1nkb, 1nkc, 1nke, 1l3s, 2bdp, 4bdp, 2xy5, 2xy6, 2xy7, 2y1i, 2y1j, 3tan, 3tap, 3taq, 3tar, 3thv, 4b9l, 4b9m, 4b9n, 4b9s, 4b9t, 4b9u, 4b9v - GsDpo I + DNA
- 4dsi, 4dsj, 4dsk, 4dsl, 4dwi - GsDpo I (mutant) + DNA
- 3ht3, 1u45, 1u47, 1u48, 1u49, 1u4b, 1l3t, 1l3u, 1l3v, 1l5u, 1lv5, 3bdp, 3ti0, 4o0i, 4uqg - GsDpo I + DNA + nucleotide
- 2kzz, 1d8y, 2kzm – EcDpo I - Escherichia coli
- DNA polymerase II
- 3maq, 3k57, 3k58, 3k59, 3k5l, 3k5m - EcDpo II (mutant) + DNA + nucleotide
- 3k5n - EcDpo II (mutant) + DNA
- 3k5o, 1q8i - EcDpo II (mutant)
- 3o59 - PhDpo II large subunit]] - Pyrococcus horikoshii
- 2kxe - PhDpo II small subunit
- 5ijl - PaDpo II large subunit
- 5ihe - PaDpo II small subunit
- 6hmf - PaDpo II small subunit (mutant)
- 6hms - PaDpo II small+large subunits + DNA – Cryo EM
- 3maq, 3k57, 3k58, 3k59, 3k5l, 3k5m - EcDpo II (mutant) + DNA + nucleotide
- DNA polymerase III subunit α
- 2hnh, 2hqa - EcDpo III subunit α catalytic fragment
- 2hpi, 2hpm - TaDpo III α subunit
- 3e0d - TaDpo III α subunit + DNA
- 3f2b, 3f2c, 3f2d, 4iqj – GkDpo III α subunit + DNA + nucleotide
- 5m1s, 5fkw, 5fkv, 5fku - EcDpo III α(mutant)β,ε subunits + DNA – Cryo EM
- 1ok7 - EcDpo III residues 1-366 + EcDpo IV C-terminal
- 1zd7, 1zde, 3nzm, 5ol5, 5ol1 - SyDpo III α subunit – Synechocystis
- 4gig - SyDpo III α subunit (mutant)
- 2keq, 4kl5, 4kl6 - NpDpo III α subunit – Nostoc punctiforme
- 4lx3, 4qfq - NpDpo III α subunit + nucleic acid binding tRNA/helicase
- 5lew - MtPol III α subunit – Mycobacterrium tuberculosis
- 2hnh, 2hqa - EcDpo III subunit α catalytic fragment
- DNA polymerase III subunit β or sliding clamp
- 2pol, 4k3s, 4pnv, 4pnw - EcDpo III subunit β
- 2xur, 3f1v, 3pwe - EcDpo III subunit β (mutant)
- 2avt - Dpo III β subunit – Streptococcus pyogenes
- 2awa - Dpo III β subunit – Streptococcus pneumoniae
- 4trt – DrDpo III β subunit – Deinococcus radiodurans
- 2p1j – TmDpo III exonuclease domain – Thermotoga maritima
- 1vpk - TmDpo III β subunit
- 3t0p - Dpo III β subunit – Eubacterium rectale
- 6ap4 - Dpo III β subunit – Acinetobacter baumannii
- 6amq - Dpo III β subunit – Enterobacter cloacae
- 5wyp, 5wce, 6izo, 6jir - Dpo III β subunit – Caulobacter crescentus
- 5w7z - RcDpo III β subunit – Rickettsia conorii
- 6man - Dpo III β subunit – Rickettsia bellii
- 6d46 - RtDpo III β subunit – Rickettsia typhi
- 1jqj, 1jql - EcDpo III subunit β,γ(mutant)
- 4tr6 - Pol III β subunit – Bacillus subtilis
- 3p16, 3rb9, 4tr7 - MtPol III β subunit
- 4tr8, 6ams - PsaPol III β subunit – Pseudomonas aeruginosa
- 6pth - PsaPol III β subunit + griselimycin
- 4s3i, 4rki - HpPol III β subunit – Helicobacter pylori
- 6aig - Dpo III β subunit – Aeropyrum pernix
- 2pol, 4k3s, 4pnv, 4pnw - EcDpo III subunit β
- DNA polymerase III subunit beta or sliding clamp complex
- 3d1g, 3qsb, 4k3k, 4k3l, 4mjp, 4mjq, 4mjr, 4n94, 4n95, 4n96, 4n97, 4n98, 4n99, 4n9a, 4ovf, 4ovg, 4ovh, 4pnu - EcDpo III subunit β + inhibitor
- 3bep - EcDpo III subunit β + DNA
- 5x06 - EcDpo III subunit β + DnaA regulatory inactivator
- 3d1f, 3q4j, 3q4k, 3q4l, 4k3l, 4k3m, 4k3o, 4k3p, 4k3q, 4k3r, 4k74, 6fvl - EcDpo III β subunit + polypeptide
- 6fvm - EcDpo III β subunit (mutant) + P7 peptide
- 5g4q, 5g48, 5fxt, 5fve - HpPol III β subunit + NSAID drug
- 5frq - HpPol III β subunit + DNA ligase peptide
- 5dai - TkPol III β subunit + FEN-1 peptide - Thermococcus kodakarensis
- 5ah4, 5ah2, 5agv, 5agu – MsPol III β subunit + gricelimycin – Mycobacterium smegmatis
- 6drt – T4Dpo III β subunit + polypeptide - Enterobacteria phage T4
- 6dj8 – Dpo III β subunit + polypeptide – Borrelia burgdorferi
- 6fvo, 6fvn - MtPol III β subunit + P7 peptide
- 6t7x - PaPol III β subunit
- 4tsz, 6t7y - PaPol III β subunit + peptide
- 6t8h - PaPol III β subunit + Dol II small subunit + DP2 – Cryo EM
- 6djk - RtDpo III β subunit + polypeptide
- 6dm6 - RcPol III β subunit + peptide
- 3d1g, 3qsb, 4k3k, 4k3l, 4mjp, 4mjq, 4mjr, 4n94, 4n95, 4n96, 4n97, 4n98, 4n99, 4n9a, 4ovf, 4ovg, 4ovh, 4pnu - EcDpo III subunit β + inhibitor
- DNA polymerase III subunit γ
- DNA polymerase III subunit δ
- DNA polymerase III subunit ε
- DNA polymerase III subunit τ
- DNA polymerase III subunit xi
- 3gli - EcDpo III subunit δ,δ’,τ,ξ + DNA
- 3gli - EcDpo III subunit δ,δ’,τ,ξ + DNA
- DNA polymerase III subunit θ
- DNA polymerase III subunit χ
- DNA polymerase III subunit φ
- DNA polymerase IV
- 4ir1, 4ir9, 4irc, 4ird, 4irk, 5zlv, 5yye, 5yyd, 5yv3, 5yv2, 5yv1, 5yv0, 5yuz, 5yuy, 5yux, 5yuw, 5yuv, 5yuu, 5yut, 5yus, 5yur - EcPol IV + DNA
- 4r8u, 5c5j, 4q45, 4q44, 4q43, 6ig1 - EcPol IV + DNA + nucleotide
- 6jup, 6juq - EcPol IV (mutant) + DNA + nucleotide
- 2rdi - SsPol IV
- 3pr4, 3pr5, 2r8g, 2r8h, 2r8i, 2uvr, 2uvu, 2uvv, 2uvw - SsPol IV (mutant) + DNA + nucleotide
- 4juz, 4jv0, 4jv1, 4jv2, 4qw8, 4qw9, 4qwa, 4qwb, 4qwc, 4qwd, 4qwe, 4tqr, 4tqs - SsPol IV + DNA + nucleotide
- 2xc9, 3m9m, 3m9n, 3m9o, 2v4q, 2v4r, 2ago, 1ryr, 1rys, 2w9a, 2w9b, 2w9c, 3gii, 3gij, 3gik, 3gil, 3gim, 3qz7, 3qz8, 3pvx, 3pw0, 3pw2, 3pw4, 3pw5, 3pw7, 3raq, 3rax, 3rb0, 3rb3, 3rb4, 3rb6, 3rbd, 3rbe, 4hyk, 4fbt, 4fbu, 4g3i, 4rzr, 6l84, 6l97 - SsPol IV + DNA
- 2xca, 2xcp, 3khg, 3khh, 3khl, 3khr, 2w8k, 2w8l, 2rdj, 2v9w, 2va2, 2va3, 2ia6, 2ibk, 2jef, 2jeg, 2jei, 2jej, 2imw, 2j6s, 2j6t, 2j6u, 2asd, 2asj, 2asl, 2atl, 2au0, 2c22, 2c28, 2c2d, 2c2e, 2c2r, 2agp, 2agq, 2bqr, 2bqu, 2br0, 2bq3, 1s9f, 1s97, 1s0m, 1s0n, 1s0o, 1s10, 1n48, 1n56, 1jx4, 1jxl, 3t5h, 3t5j, 3t5k, 3t5l, 3v6h, 3v6j, 3v6k, 4gc6, 4gc7, 5edw, 4ruc, 4rua - SsPol IV + DNA + nucleotide
- 3fds – SsPol IV + PCNA B + PCNA C
- 3bq2, 3bq0 – SaPol IV + DNA – Sulfolobus acidocaldarius
- 3bq1, 4f4w, 4f4x, 4f4y, 4f4z, 4f50 - SaPol IV + DNA + nucleotide
- 4nlg - SaPol IV (mutant) + DNA
- 4dez – MsPol IV
- 6jul – MsPol IV + DNA
- 6jum, 6jun, 6juo – MsPol IV (mutant) + DNA
- 6jus - MsPol IV + DNA + nucleotide
- 6jur - MsPol IV (mutant) + DNA + nucleotide
- 4ir1, 4ir9, 4irc, 4ird, 4irk, 5zlv, 5yye, 5yyd, 5yv3, 5yv2, 5yv1, 5yv0, 5yuz, 5yuy, 5yux, 5yuw, 5yuv, 5yuu, 5yut, 5yus, 5yur - EcPol IV + DNA
- DNA polymerase from enterobacteria phage T7
- 1zyq, 1x9m, 1x9s, 1x9w, 1tk0, 1skr, 1sks, 1skw, 1sl0, 1sl1, 1sl2, 1t7p, 6n2w - T7Dpo (mutant) + thioredoxin + DNA + nucleotide
- 1t8e, 1tk5, 1tk8, 1tkd - T7Dpo + thioredoxin + DNA + nucleotide
- 6n9x, 6n9w, 6n9v - T7Dpo + Gp4 + DNA + nucleotide derivative
- 6n9u - T7Dpo + Gp4 + DNA + RNA + nucleotide derivative
- 5ikn - T7Dpo + thioredoxin + DNA primase/helicase
- 1zyq, 1x9m, 1x9s, 1x9w, 1tk0, 1skr, 1sks, 1skw, 1sl0, 1sl1, 1sl2, 1t7p, 6n2w - T7Dpo (mutant) + thioredoxin + DNA + nucleotide
- DNA polymerase
- 2gv9 – Dpo – Herpes simplex virus
- 5n2g, 5n2e – VvDpo – Vaccinia virus
- 5n2h – VvDpo (mutant)
- 5mdn – Dpo – Pyrobaculum calidifontis
- 1bgx – TaDpo + TP7 antibody
- 1ih7 – EpDpo]] - Enterobacteria phage RB69
- 1waf, 1waj - EpDpo + nucleotide
- 3uiq, 4dtj, 4dtm, 4dtn, 4dto, 4dtp, 4dtr, 4dts, 4dtu, 4dtx, 4du1, 4du3, 4du4 - EpDpo + DNA
- 3nci, 3lds, 3l8b, 3cq8, 3cfp, 3cfr, 3kd1, 3kd5, 4e3s - EpDpo (mutant) + DNA
- 3ndk, 3ne6, 3ngi, 3nhg, 3nae, 3lzj, 3lzi, 2ozs, 2p5g, 2dy4, 1q9x, 1q9y, 1ig9, 3qep, 3rma, 3rmb, 3rmc, 3rmd, 3rwu, 3s9h, 3scx, 3si6, 3sjj, 3snn, 3spy, 3spz, 3sq0, 3sq1, 3sq2, 3sq4, 3sun, 3suo, 3sup, 3suq, 3tab, 3tae, 3taf, 3tag, 4i9q, 4j2a, 4j2b, 4j2d, 4j2e, 4khn, 4khq, 4khs, 4khu, 4khw, 4khy, 4ki4, 4ki6, 4m3r, 4m3t, 4m3u, 4m3w, 4m3x, 4m3y, 4m3z, 4m41, 4m42, 4m45, 5gnq - EpDpo (mutant) + DNA + nucleotide
- 1clq, 3iuq - EpDpo + DNA + nucleotide
- 2oyq, 2ozm, 2p5o, 2dtu, 3qei, 3qer, 3qes, 3qet, 3qev, 3qew, 3qex, 3qnn, 3qno, 4fj5, 4fj7, 4fj8, 4fj9, 4fjg, 4fjh, 4fji, 4fjj, 4fjk, 4fjl, 4fjm, 4fjn, 4fjx, 4fk0, 4fk2, 4fk4 - EpDpo (mutant) + DNA + nucleotide analog
- 2atq – EpDpo + GP32
- 1noy – T4Dpo + DNA - Enterobacteria phage T4
- 1noz – T4Dpo residues 1-388
- 2ex3 – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29
- 2py5, 2pzs, 1xhz, 1xi1 – BpDpo (mutant) + DNA
- 2pyj, 2pyl - BpDpo (mutant) + DNA + nucleotide
- 1xhx - BpDpo (mutant)
- 3a2f - PfDpo + PCNA - Pyrococcus furiosus
- 2jgu, 4ahc – PfDpo
- 4ail – PfDpo + DNA
- 1tgo - TgDpo – Thermococcus gorgonarius
- 2vwj, 2xhb – TgDpo (mutant) + DNA
- 2vwk - TgDpo (mutant)
- 1wn7, 1wns, 5vu5 – TkDpo B
- 5vu9, 5vu8, 5vu7, 5vu6, 5omf - TkDpo + DNA
- 4k8z - TkDpo (mutant) + DNA
- 6q4t - TkDpo (mutant) + DNA + nucleotide derivative
- 1qht - ThDpo (mutant) – Thermococcus
- 4k8x, 5omv, 5omq, 6is7, 6isf, 6isg, 6ish, 6isi - ThDpo (mutant) + DNA
- 4yfu - Dpo (mutant) + DNA - Bacillus
- 1d5a – DeDpo
- 2gv9 – Dpo – Herpes simplex virus
- DNA polymerase α
- 4e2i – hDpo α subunit β + large T antigen – human
- 4y97 - hDpo α catalytic+B subunits
- 5iud - hDpo α catalytic subunit + DNA
- 6as7 - hDpo α catalytic subunit (mutant) + DNA
- 4bpx - hDpo α catalytic subunit + DNA primase small subunit
- 5exr - hDpo α catalytic+B subunits + DNA primase small+large subunits
- 4q5v - hDpo α catalytic subunit + DNA + RNA + aphidicolin
- 4qcl - hDpo α catalytic subunit + DNA + RNA + nucleotide
- 2keb - hDpo αB - NMR
- 1n5g, 1k0p, 1k18 - hDpo α zinc finger domain – NMR
- 4e2i – hDpo α subunit β + large T antigen – human
- DNA polymerase β
- 4p4m, 4p4o, 4p4p - Dpo β + DNA + nucleotide – Leishmania infantum
- 4ppx - hDpo β + spiroiminohydantoin + DNA
- 3q8p, 3q8q, 3lk9, 3mby, 3isb, 3isc, 1zjm, 1tv9, 1tva, 1bpx, 1bpz, 1zqa, 1zqb, 1zqc, 1zqd, 1zqf, 1zqg, 1zqh, 1zqi, 1zaj, 1zqk, 1zql, 1zqm, 1zqn, 1zqo, 1zqp, 1zqq, 1zqr, 1zqs, 1zqt, 1zqu, 1zqv, 1zqw, 1zqx, 1zqy, 1zqz, 7ice, 7icf, 7ici, 7icj, 7icl, 7icm, 7icp, 7icr, 7ict, 7icu, 7icv, 8icb, 8icc, 9icj, 9ick, 9icl, 9icm, 9icp, 9icw, 9icx, 9icy, 7icg, 7ich, 7ick, 7icn, 7ico, 7icq, 7ics, 1zqe, 4gxi, 4gxj, 4gxk, 4kld, 4kle, 4klf, 4klg, 4klh, 4kli, 4klj, 4kll, 4klm, 4klo, 4lvs, 4klq, 4kls, 4klt, 4klu, 1zqj, 4lvs, 4m2y, 4m47, 4nlk, 4nln, 4nlz, 4nm1, 4nm2, 3gdx, 3rh4, 3rh5, 3rh6, 4tup, 4tuq, 4tur, 4tus, 5wo0, 5wnz, 5wny, 5wnx, 5vs4, 5vs3, 5vs2, 5vs1, 5vs0, 5vrz, 5vry, 5vrx, 5vrw, 5vez, 5v1r, 5v1p, 5v1o, 5v1n, 5v1j, 5v1i, 5v1h, 5v1g, 5v1f, 5ugp, 5ugo, 5ugn, 5u9h, 5u8i, 5u8h, 5u8g, 5u2t, 5u2s, 5u2r, 5tzv, 5tbc, 5tbb, 5tba, 5tb9, 5tb8, 5j2k, 5j2j, 5j2i, 5j2h, 5j2g, 5j2f, 5j2e, 5j2d, 5j2c, 5j2b, 5j2a, 5j29, 5j0y, 5j0x, 5j0w, 5j0u, 5j0t, 5j0s, 5j0r, 5j0q, 5j0p, 5j0o, 5dbc, 5dbb, 5dba, 5db9, 5db8, 5db7, 5db6, 4pgy, 7ice, 7icf, 7icg, 7ich, 7ici, 7icj, 7ick, 7icl, 7icm, 7icn, 7ico, 7icp, 7icq, 7icr, 7ics, 7ict, 7icu, 7icv, 8ica, 8icb, 8icc 8ice, 8icf, 8icg, 8ich, 8ici, 8icj, 8ick, 8icl, 8icm, 8icn, 8ico, 8icp, 8icq, 8icr, 8ics, 8ict, 8icu, 8icv, 8icw, 8icx, 8icy, 8icz, 9ica, 9icb, 9icc 9ice, 9icf, 9icg, 9ich, 9ici, 9icj, 9ick, 9icl, 9icm, 9icn, 9ico, 9icp, 9icq, 9icr, 9ics, 9ict, 9icu, 9icv, 9icw, 9icx, 9icy, 6g2q, 6ph5 - hDpo β + DNA
- 3jpn, 3jpo, 3jpp, 3jpq, 3jpr, 3jpt, 3jps, 3isd, 3c2k, 3c2l, 3c2m, 2pxi, 2iso, 2isp, 2i9g, 2fmp, 2fmq, 2fms, 1zjn, 1mq2, 1mq3, 1bpy, 8ica, 8ice, 8icf, 8icg, 8ich, 8ici, 8icj, 8ick, 8icl, 8icm, 8icn, 8ico, 8icp, 8icq, 8icr, 8ics, 8ict, 8icu, 8icv, 8icw, 8icx, 8icz, 9ice, 9icg, 9ich, 9ici, 9icq, 9ics, 9ict, 9icu, 9icv, 9icr, 9icn, 9ico, 8icy, 9ica, 9icb, 9icc, 9icf, 4do9, 4doa, 4dob, 4doc, 3rje, 3rjf, 3rjg, 3rjh, 3rji, 3rjj, 3rjk, 3tfr, 3tfs, 4mf2, 4mf8, 4mfa, 4mfc, 4mff, 4nxz, 4ny8, 4o5c, 4o5e, 4o5k, 4o9m, 4p2h, 4pgq, 4pgx, 4pha, 4phd, 4uaw, 4uay, 4uaz, 4ub1, 4ub2, 4ub3, 4ub4, 4ub5, 4ubb, 4ubc, 5eoz, 5bpc, 5bom, 5bol, 4z6f, 4z6e, 4z6d, 4z6c, 4yn4, 4ymo, 4ymn, 4ymm, 4rt3, 4rt2, 4rq8, 4rq7, 4rq6, 4rq5, 4rq4, 4rq3, 4rq2, 4rq1, 4rq0, 4rpz, 4rpy, 4rpx, 4php, 4phe, 4ph5 - hDpo β + DNA + nucleotide
- 2p66, 4f5n, 6ph6, 6uok, 6uol, 6uom - hDpo β + DNA + nucleotide analog
- 4f5o, 4f5p, 4f5q, 4f5r, 6n2t, 6n2s, 6n2r, 6mr8, 6mr7, 6e3x, 6e3w, 6e3v, 6e3r, 6dia, 6cub, 6cua, 6cu9, 6ctx, 6ctw, 6ctv, 6ctu, 6ctt, 6ctr, 6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6dic, 6btf, 6bte, 6nkr, 6nks, 6nkt, 6nku, 6nkv, 6nkw, 6nkx, 6nky, 6nkz, 6nl0, 6pkz - hDpo β (mutant) + DNA + nucleotide analog
- 3ogu, 4jwm, 4jwn, 4m9g, 4m9h, 4m9j, 4m9l, 4m9n, 4r63, 4r64, 4r65, 4r66 - hDpo β (mutant) + DNA
- 5hhi, 5hhh - hDpo β + DNA + azanide derivative
- 2v6z - hDpo β N-terminal (mutant)]] - NMR
- 3k75, 3lqc - hDpo β + DNA repair protein XRCC1
- 1rpl, 2bpc, 1bpe, 1bpb, 1bpd, 3uxn - rDpo β – rat
- 2van, 1jn3, 3uxo, 3v7l- rDpo β (mutant)
- 1dk2, 1dk3, 1bno, 1bnp - rDpo β N-terminal – NMR
- 1nom - rDpo β C-terminal
- 1huo, 1huz, 3v7j - rDpo β + DNA
- 3uxp, 3v72, 3v7k - rDpo β (mutant) + DNA
- 1bpe - rDpo β + nucleotide
- 2bpf, 2bpg - rDpo β + DNA + nucleotide
- 3au2 – TtDpo β + GTP – Thermus thermophilus
- 3b0x, 3b0y – TtDpo β (mutant) + GTP
- 3au6, 3auo – TtDpo β + GTP + DNA
β
- 4p4m, 4p4o, 4p4p - Dpo β + DNA + nucleotide – Leishmania infantum
- DNA polymerase γ
- 3ikm - hDpo γ1+ γ2
- 3ikl, 2g4c - hDpo γ2
- 2jw5 - hDpo λ BRCT domain
- 1xsl - hDpo λ catalytic domain
- 1nzp - hDpo λ lyase domain - NMR
- 3pmn, 3pnc, 3mda, 2gws, 2bcq, 2bcr, 2bcs, 2bcu, 2bcv, 1xsp, 1rzt - hDpo λ + DNA
- 3mgh, 3c5f, 3c5g, 2pfn - hDpo λ (mutant) + DNA
- 3pml, 3mdc, 1xsn - hDpo λ + DNA + nucleotide
- 4k4g, 4k4h, 4k4i - hDpo λ + DNA + nucleotide analog
- 3mgi, 3hw8, 3hwt, 3hx0, 2pfo, 2pfp, 2pfq - hDpo λ (mutant) + DNA + nucleotide
- 3ikm - hDpo γ1+ γ2
- DNA polymerase δ
- 3e0j - hDpo δ2+ δ3
- 3upq, 3uq0, 3uq2 - hDpo δ (mutant) + DNA
- 4fo6 - hDpo δ (mutant) + DNA + nucleotide analog
- 6s1m, 6s1n, 6s1o, 6tny - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM
- 6tnz - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM
- 3e0j - hDpo δ2+ δ3
- DNA polymerase ε
- 5vbn - hDpo ε subunits A+2
- 5vbn - hDpo ε subunits A+2
- DNA polymerase ζ
- 3abd, 3abe - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7
- 6ekm, 6bi7, 6bcd, 6bc8 - hDpo ζ catalytic subunit + MAD2B
- 3vu7, 4gk0 - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B
- 4fjo, 4gk5 - hDpo κ + hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B
- 3abd, 3abe - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7
- DNA polymerase η
- 2i5o - hDpo η ubiquitin-binding zinc finger – NMR
- 2lsj, 2lsi - hDpo η + DNA repair protein Rev1
- 6mp3 - hDpo η + DNA
- 4dl2, 4dl3, 4dl4, 4dl5, 4dl6, 4dl7, 4eey, 4ecq, 4ecr, 4ecs, 4ect, 4ecu, 4ecv, 4ecw, 4ecx, 4ecy, 4ecz, 4ed0, 4ed1, 4ed2, 4ed3, 4ed6, 4ed7, 4ed8, 4o3n, 4o3o, 4o3p, 4o3q, 4o3r, 4o3s, 4q8e, 4q8f, 4rnm, 4rnn, 4rno, 4x0p, 4x0q, 3mr2, 3mr3, 3mr5, 3mr6, 3si8, 3mr2, 3mr3, 3mr5, 3mr6, 5l9x, 5l1l, 5l1k, 5l1j, 5l1i, 5kg7, 5kg6, 5kg5, 5kg4, 5kg3, 5kg2, 5kg1, 5kg0, 5kfz, 5kfy, 5kfx, 5kfw, 5kfv, 5kfu, 5kft, 5kfs, 5kfr, 5kfq, 5kfp, 5kfo, 5kfn, 5kfm, 5kfl, 5kfk, 5kfj, 5kfi, 5kfh, 5kfg, 5kff, 5kfe, 5kfd, 5kfc, 5kfb, 5kfa, 5jum, 5f9n, 5f9l, 5ewg, 5ewf, 5ewe, 5dqi, 5dqh, 5dqg, 5dlg, 5dlf, 5dgb, 5dga, 5dg9, 5dg8, 5dg7, 4yr3, 4yr2, 4yr0, 4yqw, 4yp3, 4ru9, 6mxo, 6m7v, 6m7u, 6m7t, 6m7p, 6m7o, 6d0z, 6d0m, 6mq8, 6pl7, 6pl8, 6plc, 6ui2 - hDpo η + DNA + nucleotide
- 6pz3, 6q02 - hDpo η (mutant) + DNA + nucleotide
- 5aga - hDpo η + nucleotide
- 2i5o - hDpo η ubiquitin-binding zinc finger – NMR
- DNA polymerase ι
- 3q8r, 3q8s, 3h4b, 3h4d, 3gv5, 3gv7, 3gv8, 3epg, 3epi, 2fll, 2fln, 2flp, 2dpi, 2dpj, 2alz, 1zet, 1t3n, 4ebc, 4ebd, 4ebe, 4fs1, 4fs2, 4eyh, 4eyi, 3g6v, 3g6x, 3g6y, 5ulx, 5ulw, 5kt7, 5kt6, 5kt5, 5kt4, 5kt3, 5kt2 - hDpo ι + DNA + nucleotide
- 3ngd, 3osn, 3h40, 5ulx, 5ulw - hDpo ι catalytic fragment + DNA
- 2ktf - hDpo ι + ubiquitin
- 2l0f, 2l0g - hDpo ι + ubiquitin – NMR
- 2khu - hDpo ι ubiquitin binding motif – NMR
- 2khw - hDpo ι ubiquitin binding motif + ubiquitin – NMR
- 2kwu, 2kwv - mDpo ι C-terminal + ubiquitin - NMR
- 3ai4 - mDpo ι/yEGFP
- 3q8r, 3q8s, 3h4b, 3h4d, 3gv5, 3gv7, 3gv8, 3epg, 3epi, 2fll, 2fln, 2flp, 2dpi, 2dpj, 2alz, 1zet, 1t3n, 4ebc, 4ebd, 4ebe, 4fs1, 4fs2, 4eyh, 4eyi, 3g6v, 3g6x, 3g6y, 5ulx, 5ulw, 5kt7, 5kt6, 5kt5, 5kt4, 5kt3, 5kt2 - hDpo ι + DNA + nucleotide
- DNA polymerase κ
- DNA polymerase λ
- DNA polymerase μ
- 2htf, 2dun - hDpo μ BRCT domain – NMR
- 5tyx, 5tyw, 5tyv, 5tyu, 5tyg, 5tyf, 5tye, 5tyd, 5tyc, 5tyb, 5txz, 5txx, 5tws, 5twr, 5twq, 5twp - hDpo residues 132-494 + DNA
- 4yd2, 4ycx - hDpo μ residues 132-494 (mutant) + DNA
- 6ak5 - hDpo μ residues 132-397+411-494 + nucleotide derivative
- 6ipn, 6ipm, 6ipl, 6ipk, 6ipj, 6ipi, 6iph, 6aec, 6aeh, 6ak6 - hDpo μ residues 132-397+411-494 (mutant) + nucleotide derivative
- 4yd1, 6ipg, 6ipf, 6ipe, 6ipd, 5vz7, 5vz8, 5vz9, 5vza, 5vzb, 5vzc, 5vzd, 5vze, 5vzf, 5vzg, 5vzh, 5vzi, 6ak8, 6ak9, 6akh, 6p1m, 6p1n, 6p1o, 6p1p, 6p1q, 6p1r, 6p1s, 6p1t, 6p1u, 6p1v, 6p1w - hDpo μ residues 132-494+411-494 (mutant) + DNA + nucleotide derivative
- 2ihm - mDpo μ catalytic domain + DNA – mouse
- 2htf, 2dun - hDpo μ BRCT domain – NMR
- DNA polymerase ν
- DNA polymerase χ or repair DNA polymerase chi
- DNA polymerase θ
- DNA polymerase from yeast
- 3oiq - yDpo α + cell division control protein 13
- 3flo, 3lgb - yDpo α subunits A,B
- 4b08, 4fvm - yDpo α subunit A
- 4fxd, 4fyd - yDpo α subunit A + RNA + DNA
- 5oki - yDpo α subunit A + DCC1 + chromosome fidelity protein
- 3iay - yDpo δ catalytic subunit + DNA
- 6p1h - yDpo δ catalytic+small+3 subunits + DNA + nucleotide – Cryo EM
- 6wjv - yDpo II ε – Cryo EM
- 6hv8 - yDpo II ε subunit A+B – Cryo EM
- 3oha, 3ohb, 3mfh - yDpo ε (mutant) + DNA
- 6i8a, 6qib - yDpo II ε subunit A + DNA + nucleotide
- 6g0a, 6fwk, 3mfi, 4m8o - yDpo II ε subunit A (mutant) + DNA + nucleotide derivative
- 6s1c, 6s2e, 6s2f - yDpo II ε subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins
- 6i8a, 6qib - yDpo II ε subunit A + DNA + nucleotide
- 3mfi, 4m8o - yDpo ε (mutant) + DNA + nucleotide
- 6hv9 - yDpo II ε subunit A+B + CMG + DNA + nucleotide – Cryo EM
- 2r8j, 2r8k, 4ptf - yDpo ε catalytic domain + DNA + nucleotide
- 6h1v - yDpo ε catalytic domain (mutant) + DNA + nucleotide
- 2xgp, 2xgq, 2wtf - yDpo ε + DNA
- 5y27, 5y26 - Dpo ε subunit D + transcription factor – fission yeast
- 1jih, 5vtp – yDpo η catalytic domain
- 3bjy, 2aq4 – yRev1 catalytic domain + DNA + nucleotide
- 3oiq - yDpo α + cell division control protein 13
- DNA polymerase Rev1
- Terminal deoxynucleotidyl transferase
- Terminal deoxynucleotidyl transferase binary complex
- 4iqt, 4iqu, 4iqv, 4iqw – mTdT catalytic domain + inhibitor
- 4i2i – mTdT catalytic domain + Mg + Zn + adenosine-pentaphosphate
- 4i2j – mTdT catalytic domain + CTP + Zn
- 1kej – mTdT catalytic domain + ATP derivative + Co
- 4i2d – mTdT catalytic domain + ATP derivative + Mg
- 4i29 – mTdT catalytic domain + AMP derivative + Mn
- 4i2b – mTdT catalytic domain + AMPCPP + Mg
- 4i2c – mTdT catalytic domain + AMPCPP + Mn
- 4i2a – mTdT catalytic domain + UMP derivative + Mg
- 4iqt, 4iqu, 4iqv, 4iqw – mTdT catalytic domain + inhibitor
Terminal deoxynucleotidyl transferase ternary complex with DNA
- 4i2e – mTdT catalytic domain + AMPCPP + Co + DNA
- 4i2h – mTdT catalytic domain + AMPCPP + Zn + Mg + DNA
- 4i27 – mTdT catalytic domain + TTP derivative + TMP + Mg + DNA
- 1kdh – mTdT catalytic domain + UMP derivative + Mg + DNA
- 4i28, 4i2f – mTdT catalytic domain + Mg + Zn + DNA
- 4i2g – mTdT catalytic domain + Mg + Co + DNA
- 4i2e – mTdT catalytic domain + AMPCPP + Co + DNA
