Line 566:
Line 566: {{#tree:id=alphabeticalIndex|openlevels=1|close=top|open=top|
{{#tree:id=alphabeticalIndex|openlevels=1|close=top|open=top|
** A
** A
*** [[Acetylcholinesterase]]
*** [[Acetylcholinesterase#Selected_3D_Structures_of_AChE| Acetylcholinesterase]]
*** [[Aconitase]]
*** [[Aconitase]]
*** [[Actin]]
*** [[Actin]]
Line 572:
Line 572: *** [[Actinin]]
*** [[Actinin]]
*** [[Adenylyl cyclase]]
*** [[Adenylyl cyclase]]
*** [[ADP-ribosyl cyclase]]
*** [[Adrenodoxin]]
*** [[Adrenodoxin]]
*** [[Agrin]]
*** [[Agrin]]
*** [[Angiotensin-Converting Enzyme]]
*** [[Angiotensin-Converting_Enzyme#Additional_3D_Structures_of_ACE| Angiotensin-Converting Enzyme]]
*** [[Annexin]]
*** [[Annexin]]
*** [[Antibody#Additional_3D_Structures_of_the_Immunoglobulin|Antibody]] or [[Monoclonal_Antibody#Additional_3D_Structures_of_Selected_Therapeutic_Monoclonal_Antibodies|Monoclonal Antibody]]
*** [[Aquaporin]]
*** [[Aquaporin]]
*** [[ATPase]]
*** [[ATPase]]
*** [[Avidin]]
*** [[Avidin]]
** B
** B
*** [[Bungarotoxin]]
*** [[Butyrylcholinesterase]]
*** [[Butyrylcholinesterase]]
*** [[BPTI]] (Basic Pancreatic Trypsin Inhibitor)
*** [[BPTI]] (Basic Pancreatic Trypsin Inhibitor)
Line 585:
Line 588: *** [[Cadherin]]
*** [[Cadherin]]
*** [[Calmodulin]]
*** [[Calmodulin]]
*** [[Ca2+/Calmodulin-dependent kinase]]
*** [[Ca2+/Calmodulin dependent protein kinase]]
*** [[Catenin]]
*** [[Catenin]]
*** [[Cathepsin]]
*** [[Cluster of Differentiation 38]]
*** [[Cystic Fibrosis Transmembrane regulator]]
*** [[Cystic Fibrosis Transmembrane regulator]]
*** [[Chymotrypsin]]
*** [[Chymotrypsin]]
Line 595:
Line 600: *** [[Dihydrofolate Reductase]]
*** [[Dihydrofolate Reductase]]
** E
** E
*** [[EGFR]]
*** [[Epidermal Growth Factor Receptor ]]
*** [[Eglin]]
*** [[Eglin]]
*** [[Elastase]]
*** [[Elastase]]
*** [[Endoplasmin]]
*** [[Endoplasmin]]
** F
** F
*** [[Fasciculin]]
*** [[Ferredoxin]]
*** [[Ferredoxin]]
*** [[Ferritin]]
*** [[Ferritin]]
Line 610:
Line 616: ** G
** G
*** [[Gelsolin]]
*** [[Gelsolin]]
*** [[Green Fluorescent Protein]]
*** [[Gyrase]]
*** [[Gyrase]]
** H
** H
*** [[Heat shock protein]]
*** [[Heat shock protein]]
*** [[Hirudin]]
*** [[Hirudin]]
*** [[HMGR#Additional_3D_Structures_of_HMG-CoA_Reductase|HMG-CoA Reductase]]
** I
** I
*** [[Ion_channels#Available_structures|Ion Channels]]
*** [[Isocitrate dehydrogenase]]
*** [[Isocitrate dehydrogenase kinase/phosphatase]]
** J
** J
** K
** K
Line 622:
Line 633: ** M
** M
*** [[Malate Dehydrogenase]]
*** [[Malate Dehydrogenase]]
*** [[Monoclonal Antibody]]
*** [[Myoglobin]]
*** [[Myoglobin]]
*** [[Myosin]]
*** [[Myosin]]
** N
** N
*** [[NEDD8]]
*** [[Nucleoporin]]
*** [[Nucleoporin]]
*** [[Neuroligin]]
** O
** O
** P
** P
*** [[PPAR#Additional_3D_Structures_of_PPAR|Peroxisome Proliferator-Activated Receptors]]
*** [[Phenylethanolamine N-methyltransferase]]
*** [[Potassium, Calcium Channel]]
*** [[Potassium, Calcium Channel]]
*** [[Porin]]
*** [[Porin]]
*** [[Proteasome]]
** Q
** Q
** R
** R
*** [[RecA]]
*** [[Recombinase A ]]
*** [[Resolvase]]
*** [[Resolvase]]
*** [[Reverse Transcriptase]]
*** [[Reverse_Transcriptase#3D_Structures_of_Reverse_transcriptase| Reverse Transcriptase]]
*** Ribosome & Ribosomal Proteins
**** [[Ribosome#Additional_Ribosome_Structures|Ribosome]]
**** [[Ribosomal protein S1]]
**** [[Ribosomal protein S2]]
**** [[Ribosomal protein S3]]
**** [[Ribosomal protein S4]]
**** [[Ribosomal protein S10]]
**** [[Ribosomal protein S11]]
**** [[Ribosomal protein S12]]
**** [[Ribosomal protein S13 ]]
** S
** S
*** [[Severin]]
*** [[Severin]]
*** [[SGAP#Structures_Available|Streptomyces griseus Aminopeptidase (SGAP)]]
*** [[Spectrin]]
*** [[Spectrin]]
*** [[Strepavidin]]
*** [[Strepavidin]]
*** [[Subtilisin]]
*** [[Subtilisin]]
*** [[SUMO]]
*** [[Superoxide Dismutase]]
*** [[Superoxide Dismutase]]
*** [[Superoxide reductase]]
*** [[Superoxide Reductase ]]
** T
** T
*** [[Talin]]
*** [[Talin]]
Line 647:
Line 676: *** [[Telethonin]]
*** [[Telethonin]]
*** [[Telomerase]]
*** [[Telomerase]]
*** [[Thermolysin]]
*** [[Thioredoxin]]
*** [[Thioredoxin]]
*** [[Titin]]
*** [[Titin]]
Line 656:
Line 686: *** [[Ubiquitin]]
*** [[Ubiquitin]]
** V
** V
*** [[VEGF#Additional_3D_Structures_of_VEGF|Vascular Endothelial Growth Factor]]
*** [[VEGFR#Additional_3D_Structures_of_VEGFR|Vascular Endothelial Growth Factor Receptor]]
*** [[Villin]]
*** [[Villin]]
*** [[Vinculin]]
*** [[Vinculin]]
Line 662:
Line 694: ** Y
** Y
** Z
** Z
}}
}}
This guide to the contents of Proteopedia is maintained manually (not automatically generated) and so is inevitably incomplete. Please be sure to use the search slots at the left if you don't find what you are looking for below.
When you create a new page in Proteopedia, please add it to both the "Index by Topic" and the "Alphabetical Index".
Index by Topic {"openlevels":1,"close":"top","open":"top"}
Introduction to Structural Biology
Biomolecules
About Macromolecular Structure Nucleotides, Nucleic Acids and Genetic Information
Amino Acids
Proteins, Primary Structure
Proteins, Three-Dimensional Structure
Colored Proteins & those that Change Color
DNA Binding Proteins
Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
Lipids and Biological Membranes Lipid Binding Proteins
Membrane Transport Proteins
Prions and Intrinsically Disordered Proteins
Toxins
Mitosis, Meiosis and Cargo Transport Proteins
Viruses
Colored Proteins & those that Change Color
DNA Binding Proteins
Enzymes
Enzymatic Catalysis
Enzyme Inhibitors
Enzyme Kinetics, Inhibition, and Control
Biochemical Signaling
Enzymes - Molecular Machines
Fibrous Proteins
Membrane Transport Proteins
Myoglobin & Hemoglobin
Nervous System Proteins
Acetylcholinesterase (AChE)
Acetylcholine Flexibility of aromatic residues in acetylcholinesterase AChE inhibitors (In Different Languages)
Acetylcholinesterase - AChE native
3lii – hAChE - recombinant human 1ea5 , 2ace – Tc AChE – trigonal – Torpedo californica 2j3d – Tc AChE – monoclinic 1w75 – Tc AChE – orthorhombic 1eea – Tc AChE – cubic 2vt6 , 2vt7 – Tc AChE – different dosage 1qid to 1qim - Tc AChE synchrotron radiation damage 1j06 , 1maa – mAChE - mouse 1qo9 – Dm AChE - Drosophila 1c2o , 1c2b – electrophorus AChE – Electric eel AChE active site inhibitors conjugating at the bottom of the active site gorge
2w9i – Tc AChE + methylene blue 2wls – MosAChE + AMTS13 2vq6 – Tc AChE + 2-PAM 2j3q – Tc AChE + Thioflavin T 2ha0 – mAChE + ketoamyltrimethylammonium 2h9y – mAChE + TMTFA 1gpk , 1gpn , 1vot – Tc AChE + huperzine 1gqr – Tc AChE + rivastigmine 1gqs – Tc AChE + NAP 1e66 – Tc AChE + huprine 1dx4 , 1qon – Dm AChE + tacrine derivative 1oce – Tc AChE + MF268 1ax9 , 1ack – Tc AChE + edrophonium 1amn – Tc AChE + TMTFA 1acj – Tc AChE + tacrine AChE peripheral site inhibitors conjugating at the surface of the protein
1ku6 - mAChE + fasciculin 2 1ku6 , 1mah - mAChE + fasciculin 2 1j07 - mAChE + decidium 1n5m - mAChE + gallamine 1n5r - mAChE + propidium 1b41 , 1f8u - hAChE + fasciculin 2 1fss - TcAChE + fasciculin 2 AChE bis inhibitors spanning the active site gorge
AChE bivalent inhibitors 3i6m – Tc AChE + N-piperidinopropyl galanthamine 3i6z - Tc AChE + saccharinohexyl galanthamine 1zgb , 1zgc – Tc AChE + tacrine (10) hupyridone 2w6c – Tc AChE + bis-(-)-nor-meptazinol 2ckm , 2cmf – Tc AChE + bis-tacrine 2cek – Tc AChE + N-[8-(1,2,3,4-tetrahydroacridin-9-ylthio)octyl]-1,2,3,4-tetrahydroacridin-9-amine 1ut6 - Tc AChE + N-9-(1,2,3,4-tetrahydroacridinyl)-1,8-diaminooctane 1odc - Tc AChE + N-4-quinolyl-N-9-(1,2,3,4-tetrahydroacridinyl)-1,8-diaminooctane 1w4l , 1w6r , 1w76 , 1dx6 , 1qti - TcAChE + galanthamine and derivative 1q83 , 1q84 - mAChE + TZ2PA6 1h22 , 1h23 – Tc AChE + bis-hupyridone 1hbj – Tc AChE + quinoline derivativev 1e3q – Tc AChE + bw284c51 1eve – Tc AChE + e2020 1acl – Tc AChE + decamethonium AChE organophosphate inhibitors causing irreversible inhibition
2wu3 – mAChE + fenamiphos and HI-6 2wu4 – mAChE + fenamiphos and ortho-7 2jgf - mAChE + fenamiphos 2wfz , 2wg0 , 1som - Tc AChE + soman 2wg1 - Tc AChE + soman + 2-PAM 2whp , 2whq , 2whr – mAChE + sarin and HI-6 2jgg - mAChE + sarin 2jgl - mAChE + VX and sarin 1cfj - Tc AChE + sarin, GB 3dl4 , 3dl7 – mAChE + tabun 2jey – mAChE + HLO-7 2c0p , 2c0q - mAChE + tabun 2jez - mAChE + tabun + HLO-7 2jf0 - mAChE + tabun + Ortho-7 2jgh - mAChE + VX 1vxo , 1vxr - Tc AChE + VX 2jgi , 2jgm - mAChE + DFP 1dfp - Tc AChE + DFP 2jgj , 2jgk , 2jge - mAChE + methamidophos 2gyu - mAChE + HI-6 2gyv - mAChE + Ortho-7 2gyw - mAChE + obidoxime AChE substrate analogues mimicking the binding of the substrate acetylcholine
2ha4 – mAChE (mutant) + acetylcholine 2vja , 2vjb , 2vjc , 2vjd , 2cf5 – Tc AChE + 4-oxo-N,N,N-trimethylpentanaminium 2v96 , 2v97 , 2v98 , 2v99 – Tc AChE + 1-(2-nitrophenyl)-2,2,2-trifluoroethyl-arsenocholine 2ha2 – mAChE + succinylcholine 2ha3 - mAChE + choline 2ha5 – mAChE (mutant) + acetylthiocholine 2ha6 – mAChE (mutant) + succinylthiocholine 2ha7 – mAChE (mutant) + butyrylthiocholine 2ch4 , 2c58 – Tc AChE + acetylthiocholine 2c5g – Tc AChE + thiocholine Others…
2j4f – Tc AChE + Hg 1vzj – Tc AChE tetramerization domain 1jjb – Tc AChE + PEG Acetylcholine binding protein (AChBP) Butyrylcholinesterase (BChE) Glutamate Receptor Prions and Intrinsically Disordered Proteins
Small Iron Sulfur Proteins
Ferredoxin (Fd)
2Fe-2S containing ferredoxins
3hui – Fd – Rhodopseudomonas palustris 2kaj , 1dox , 1doy – SyFd +Ga – Synechocystis – NMR 1off – SyFd 3gce – Fd – Nocardioides aromaticivorans 2e4p , 2e4q - Fd – Pseudomonas sp. 2q3w , 1vm9 - PmFd (mutant) – Pseudomonas mendocina 2i7f - Fd – Rhodobacter capsulatus 1rfk - Fd – Cyanobacterium masticogladus laminosus 1vck - Fd – Pseudomonas resinovorans 1wri , 1frr - Fd – Equisetum arvense 1sjg - PmFd– NMR 1iue - Fd– Plasmodium falciparum 1m2a –AeFd – Aquifex aeolicus 1m2b , 1m2d , 1f37 , 1f5b , 1f5c – AeFd (mutant) 1l5p – Fd – Trichomonas vaginalis 1i7h - Fd – Escherichia coli 1czp , 1qt9 , 1frd , 1fxa - aFd– anabaena 1j7a , 1j7b , 1j7c , 1qoa , 1qob , 1qof , 1qog - aFd (mutant) 1e0z – Fd – Halobacterium salinarium 1pfd – Fd – Petroselinum crispum – NMR 1a70 - Fd (mutant) – Spinacia oleracea 1awd - Fd – Chlorella fusca 2cjn , 2cjo , 1roe – SyFd – NMR 1rof – SyFd – Synechococcus elongates 1doi - Fd – Haloarcula marismortui 4fxc – Fd – Spirulina platensis 1fxi – Fd – Aphanothece sacrum 3dqy , 2qpz - Fd – Pseudomonas putida 4Fe-4S containing ferredoxins
3eun – AvFd – Allochromatium vinosum 3exy - AvFd (mutant) 2vkr - Fd+Zn – Acidianus ambivalens 2z8q - PfFd (mutant) – Pyrococcus furiosus 2fgo - Fd– Pseudomonas aeruginosa 1iqz , 1ir0 - BtFd – Bacillus thermoproteolyticus 1rgv - Fd – Thauera aromatica 1dax , 1dfd – DaFd – Desulfovibrio africanus – NMR 1fxr - DaFd 1vjw – Fd – Thermotoga maritima 3Fe-4S containing ferredoxins
2v2k – Fd – Mycobacterium smegmatis 1wtf - BtFd (mutant) 1sj1 - PfFd 1fxd - DgFd – Desulfovibrio gigas 1f2g – DgFd – NMR 1xer - Fd – Sulfolobus tokodaii 4Fe-4S+3Fe-4S containing ferredoxins
1gao , 6fdr , 7fd1 , 7fdr , 1axq , 6fd1 , 1frh , **** 1fri ,1frj , 1frk , 1frl , 1frm , 1fda , 1fdb , **** 1fdd , 5fd1 , 1fer – AvFd – Azotobacter vinelandii 1pc4 , 1pc5 , 1g6b , 1g3o , 1ff2 , 1b0v , 1d3w , **** 1b0t , 1a6l , 1ftc , 1frx , 2fd2 , 1fd2 - AvFd (mutant) 1h98 – Fd – Thermus thermophilus 1a8p , 1bd6 - BsFd – Bacillus schlegelii – NMR 4Fe-4S+4Fe-4S containing ferredoxins
1dur – Fd – Peptoniphilus asaccarolyticus 1bwe , 1bqx - BsFd (mutant) – NMR 2fdn , 1fca , 1fdn - Fd – Clostridium acidi-urici 1blu - Fd – Chromatium vinosum 1clf – Fd – Clostridium pasteurianum – NMR Adrenoredoxin
2jqr – ADR Fd domain (mutant)+cytochrome c (mutant) – yeast – NMR 2bt6 – cADR1 modified – cow 1l6u , 1l6v – cADR1 – NMR 1e6e – cADR (mutant)+ADR reductase 1cje , 1ayf - cADR Putidaredoxin
Terpredoxin
1b9r – TER – Pseudomonas - NMR Toxins
Diseases
Evolution
Gene Expression and Replication
Nucleic Acid Structure
DNA Replication, Repair, and Recombination
Transcription and RNA Processing
Protein Synthesis
Regulation of Gene Expression
Immune System
Metabolism
Introduction to Metabolism Glucose Catabolism
Glycogen Metabolism and Gluconeogenesis
Citric Acid Cycle
Electron Transport and Oxidative Phosphorylation
Photosynthesis
Lipid Metabolism
Amino Acid Metabolism
Mammalian Fuel Metabolism: Integration and Regulation Nucleotide Metabolism
Methods of Structure Determination
X-ray
NMR
Electron Microscopy Methods of Structure & Sequence Analysis
Structural Analysis & Visualization
Sequence Analysis
Model Structures
Miscellaneous
Alphabetical Index (incomplete -- still in development as of Sept 18 2010. Missing many pages from the above Index by Topic and from Proteopedia:Interesting_Pages )
File:Picture 15.png {"openlevels":1,"close":"top","open":"top"}
A
B
C
D
E
F
G
H
I
J K
L
M
N
O P
Q R
S
T
U
V
W X Y Z
