DNA polymerase 3D structures: Difference between revisions
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**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br /> | **[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br /> | ||
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br /> | **[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br /> | ||
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[ | **[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[7f4y]] - EpDpo (mutant) + DNA + nucleotide<br /> | ||
**[[1clq]], [[3iuq | **[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br /> | ||
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | **[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | ||
**[[2atq]] – EpDpo + GP32<br /> | **[[2atq]] – EpDpo + GP32<br /> | ||
Revision as of 07:48, 16 February 2023
3D Structures of DNA polymerase
Updated on 16-February-2023
6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6ph6, 6u2o, 6u6b, 6uok, 6uol, 6uom, 6w2m, 7k96 - hDpo beta + DNA + nucleotide analog
- 4f5o, 4f5p, 4f5q, 4f5r, 6dic, 6btf, 6bte, 6nkr, 6nks, 6nkt, 6nku, 6nkv, 6nkw, 6nkx, 6nky, 6nkz, 6nl0, 6pkz - hDpo beta (mutant) + DNA + nucleotide analog
- 3ogu, 4jwm, 4jwn, 4m9g, 4m9h, 4m9j, 4m9l, 4m9n, 4r63, 4r64, 4r65, 4r66 - hDpo beta (mutant) + DNA
- 5hhi, 5hhh - hDpo beta + DNA + azanide derivative
- 2v6z - hDpo beta N-terminal (mutant)]] - NMR
- 3k75, 3lqc - hDpo beta + DNA repair protein XRCC1
- 1rpl, 2bpc, 1bpe, 1bpb, 1bpd, 3uxn - rDpo beta – rat
- 2van, 1jn3, 3uxo, 3v7l- rDpo beta (mutant)
- 1dk2, 1dk3, 1bno, 1bnp - rDpo beta N-terminal – NMR
- 1nom - rDpo beta C-terminal
- 1huo, 1huz, 3v7j - rDpo beta + DNA
- 3uxp, 3v72, 3v7k - rDpo beta (mutant) + DNA
- 1bpe - rDpo beta + nucleotide
- 2bpf, 2bpg - rDpo beta + DNA + nucleotide
- 8e10 - mDpo beta
- 8e11 - mDpo beta (mutant)
- 3au2 – TtDpo β + GTP – Thermus thermophilus
- 3b0x, 3b0y – TtDpo β (mutant) + GTP
- 3au6, 3auo – TtDpo β + GTP + DNA
- 4p4m, 4p4o, 4p4p - Dpo + DNA + nucleotide – Leishmania infantum
- 4f5o, 4f5p, 4f5q, 4f5r, 6dic, 6btf, 6bte, 6nkr, 6nks, 6nkt, 6nku, 6nkv, 6nkw, 6nkx, 6nky, 6nkz, 6nl0, 6pkz - hDpo beta (mutant) + DNA + nucleotide analog
- DNA polymerase beta-like protein
- DNA polymerase gamma
- 3ikm - hDpo gamma1+gamma2
- 3ikl, 2g4c - hDpo gamma2
- 2jw5 - hDpo gamma BRCT domain
- 1xsl - hDpo gamma catalytic domain
- 1nzp - hDpo gamma lyase domain - NMR
- 3pmn, 3pnc, 3mda, 2gws, 2bcq, 2bcr, 2bcs, 2bcu, 2bcv, 1xsp, 1rzt - hDpo gamma + DNA
- 3mgh, 3c5f, 3c5g, 2pfn - hDpo gamma (mutant) + DNA
- 3pml, 3mdc, 1xsn - hDpo gamma + DNA + nucleotide
- 5c53, 5c52, 5c51 - hDpo gamma1 + DNA + nucleotide + pyrimidine derivative
- 4ztz, 4ztu - hDpo gamma1, gamma2 + DNA + nucleotide
- 4k4g, 4k4h, 4k4i - hDpo gamma + DNA + nucleotide analog
- 3mgi, 3hw8, 3hwt, 3hx0, 2pfo, 2pfp, 2pfq - hDpo gamma (mutant) + DNA + nucleotide
- 3ikm - hDpo gamma1+gamma2
- DNA polymerase delta
- 3e0j - hDpo delta2+delta3
- 3upq, 3uq0, 3uq2 - hDpo δ (mutant) + DNA
- 4fo6 - hDpo δ (mutant) + DNA + nucleotide analog
- 6s1m, 6s1n, 6s1o, 6tny - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM
- 6tnz - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM
- 7kc0 - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM
- 3e0j - hDpo delta2+delta3
- DNA polymerase epsilon
- 5vbn - hDpo epsilon subunits A+2
- 5vbn - hDpo epsilon subunits A+2
- DNA polymerase zeta
- 3abd, 3abe - hDpo zeta catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7
- 6ekm, 6bi7, 6bcd, 6bc8 - hDpo zeta catalytic subunit + MAD2B
- 3vu7, 4gk0, 6ws0 - hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B
- 6ws5 - hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B + inhibitor
- 4fjo, 4gk5 - hDpo kappa + hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B
- 6v8p - hDpo zeta catalytic subunit + hDpo d subunits 3+small – Cryo EM
- 6v93 - hDpo zeta catalytic+processivity subunits + hDpo d subunits 3+small + DNA + dCTP – Cryo EM
- 3abd, 3abe - hDpo zeta catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7
- DNA polymerase eta
- 2i5o - hDpo eta ubiquitin-binding zinc finger – NMR
- 3wup - hDpo eta ubiquitin-binding zinc finger
- 3tq1, 4j9k, 4j9l, 4j9m, 4j9n, 4j9o, 4j9p, 4j9q, 4j9r, 4j9s, 6mp3 - hDpo eta + DNA
- 3jaa, 4dl2, 4dl3, 4dl4, 4dl5, 4dl6, 4dl7, 4eey, 4ecq, 4ecr, 4ecs, 4ect, 4ecu, 4ecv, 4ecw, 4ecx, 4ecy, 4ecz, 4ed0, 4ed1, 4ed2, 4ed3, 4ed6, 4ed7, 4ed8, 4o3n, 4o3o, 4o3p, 4o3q, 4o3r, 4o3s, 4q8e, 4q8f, 4rnm, 4rnn, 4rno, 3si8, 3mr2, 3mr3, 3mr5, 3mr6, 5l9x, 5l1l, 5l1k, 5l1j, 5l1i, 5kg7, 5kg6, 5kg5, 5kg4, 5kg3, 5kg2, 5kg1, 5kg0, 5kfz, 5kfy, 5kfx, 5kfw, 5kfv, 5kfu, 5kft, 5kfs, 5kfr, 5kfq, 5kfp, 5kfo, 5kfn, 5kfm, 5kfl, 5kfk, 5kfj, 5kfi, 5kfh, 5kfg, 5kff, 5kfe, 5kfd, 5kfc, 5kfb, 5kfa, 5jum, 5f9n, 5f9l, 5ewg, 5ewf, 5ewe, 5dqi, 5dqh, 5dqg, 5dlg, 5dlf, 5dgb, 5dga, 5dg9, 5dg8, 5dg7, 4yr3, 4yr2, 4yr0, 4yqw, 4yp3, 4ru9, 6mxo, 6m7v, 6m7u, 6m7t, 6m7p, 6m7o, 6d0z, 6d0m, 6mq8, 6pl7, 6pl8, 6plc, 6ui2, 6uqi, 6v5k, 6w5x, 6wk6, 7l69, 7lcd, 7m7l, 7m7m, 7m7n, 7m7o, 7m7p, 7m7q, 7m7r, 7m7s, 7m7t, 7m7u, 7m7y, 7m7z, 7m80, 7m81, 7m82, 7m83, 7m84, 7m85, 7m86, 7m87, 7m88, 7m89, 7m8a, 7m8b, 7m8c, 7m8d, 7u72, 7u73, 7u74, 7u75, 7u76, 7u77, 7u78, 7u79, 7u7a, 7u7b, 7u7c, 7u7d, 7u7e, 7u7g, 7u7f, 7u7i, 7u7j, 7u7k, 7u7l, 7u7r, 7u7s, 7u7t, 7u7u, 7u7v, 7u7w, 7u7x, 7u7y, 7u7z, 7u80, 7u81, 7u82, 7u83, 7u84, 8e85, 8e86, 8e87, 8e88, 8e89, 8e8a, 8e8c, 8e8d, 8e8e, 8e8f, 8e8g, 8e8h, 8e8j, 8e8k - hDpo eta + DNA + nucleotide
- 6pz3, 6q02 - hDpo eta (mutant) + DNA + nucleotide
- 5aga - hDpo eta + nucleotide
- 2i5o - hDpo eta ubiquitin-binding zinc finger – NMR
- DNA polymerase iota
- 3q8r, 3q8s, 3h4b, 3h4d, 3gv5, 3gv7, 3gv8, 3epg, 3epi, 2fll, 2fln, 2flp, 2dpi, 2dpj, 2alz, 1zet, 1t3n, 4ebc, 4ebd, 4ebe, 4fs1, 4fs2, 4eyh, 4eyi, 3g6v, 3g6x, 3g6y, 5ulx, 5ulw, 5kt7, 5kt6, 5kt5, 5kt4, 5kt3, 5kt2 - hDpo iota + DNA + nucleotide
- 3ngd, 3osn, 3h40 - hDpo iota catalytic fragment + DNA
- 2ktf - hDpo iota + ubiquitin
- 2l0f, 2l0g - hDpo iota + ubiquitin – NMR
- 2khu - hDpo iota ubiquitin binding motif – NMR
- 2khw - hDpoiota ubiquitin binding motif + ubiquitin – NMR
- 2kwu, 2kwv - mDpo iota C-terminal + ubiquitin - NMR
- 3ai4 - mDpo iota/yEGFP
- 3q8r, 3q8s, 3h4b, 3h4d, 3gv5, 3gv7, 3gv8, 3epg, 3epi, 2fll, 2fln, 2flp, 2dpi, 2dpj, 2alz, 1zet, 1t3n, 4ebc, 4ebd, 4ebe, 4fs1, 4fs2, 4eyh, 4eyi, 3g6v, 3g6x, 3g6y, 5ulx, 5ulw, 5kt7, 5kt6, 5kt5, 5kt4, 5kt3, 5kt2 - hDpo iota + DNA + nucleotide
- DNA polymerase kappa
- 1t94 - hDpo kappa
- 3in5, 5w2c, 5w2a, 5t14 - hDpo kappa + DNA
- 2w7o, 2w7p, 2oh2, 3pzp, 4u6p, 6cst, 6bs1, 6brx, 5w2a, 5w2c - hDpo kappa + DNA + nucleotide
- 7nv0, 7nv1 - hDpo kappa + PCNA + DNA + nucleotide
- 4u7c, 4y6p - hDpo kappa + DNA + benzopyrene derivative
- 2lsi - hDpo kappa peptide + hRev1
- 2lsk - mDpo kappa + DNA repair protein Rev1
- 1t94 - hDpo kappa
- DNA polymerase lambda
- 5cb1 – hDpo
- 5iio, 5iin, 5iim, 5iil, 5iik, 5iij, 5iii, 5ddm – hDpo + DNA
- 5cp2 – hDpo (mutant) + DNA
- 5dkw, 5ca7, 4xus, 4xrh, 4xq8, 4xa5, 4x5v, 7m07, 7m08, 7m09, 7m0a, 7m0b, 7m0c, 7m0d, 7m0e – hDpo + DNA + nucleotide
- 5cwr, 5cr0, 5cj7, 5chg, 7m43, 7m44, 7m45, 7m46, 7m47, 7m48, 7m49, 7m4a, 7m4b, 7m4c, 7m4d, 7m4e, 7m4f, 7m4h, 7m4i, 7m4j, 7m4k, 7m4l – hDpo (mutant) + DNA + nucleotide
- 5ddy – hDpo + nucleotide
- 5cb1 – hDpo
- DNA polymerase mu or DNA-directed DNA/RNA polymerase
- 2htf, 2dun - hDpo mu BRCT domain residues 24-143 – NMR
- 4lzd - hDpo mu residues 132-494
- 4lzg, 5tyz, 5tyy, 5tyx, 5tyw, 5tyv, 5tyu, 5tyg, 5tyf, 5tye, 5tyd, 5tyc, 5tyb, 5txz, 5txx, 5tws, 5twr, 5twq, 5twp, 5zlc - hDpo mu residues 132-494 + DNA
- 4yd2, 4ycx - hDpo mu residues 132-494 (mutant) + DNA
- 6ak5 - hDpo mu residues 132-397+411-494 + nucleotide derivative
- 6ipn, 6ipm, 6ipl, 6ipk, 6ipj, 6ipi, 6iph, 6aec, 6aeh, 6ak6 - hDpo mu residues 132-397+411-494 (mutant) + nucleotide derivative
- 6vez, 6vf0, 6vf1, 6vf2, 6vf3, 6vf4, 6vf5, 6vf6, 6vf7, 6vf8, 6vf9, 6vfa, 6vfb, 6vfc, 7co6, 7co8, 7co9, 7coa, 7cob, 7cod, 7kss, 7kst, 7ksu, 7ksv, 7ksw, 7ksx, 7ksy, 7ksz, 7kt0, 7kt1, 7kt2, 7kt3, 7kt4, 7kt5, 7kt6, 7kt7, 7kt9, 7kta, 7ktb, 7ktc, 7ktd, 7kte, 7ktf, 7ktg, 7kth, 7kti, 7ktj, 7ktk, 7ktl, 7ktm, 7ktn - hDpo mu + DNA + nucleotide derivative
- 4m04, 4m0a, 4yd1, 6ipg, 6ipf, 6ipe, 6ipd, 5vz7, 5vz8, 5vz9, 5vza, 5vzb, 5vzc, 5vzd, 5vze, 5vzf, 5vzg, 5vzh, 5vzi, 6ak8, 6ak9, 6akh, 6p1m, 6p1n, 6p1o, 6p1p, 6p1q, 6p1r, 6p1s, 6p1t, 6p1u, 6p1v, 6p1w, 7coc - hDpo mu residues 132-494+411-494 (mutant) + DNA + nucleotide derivative
- 2ihm - mDpo mu catalytic domain + DNA – mouse
- 2htf, 2dun - hDpo mu BRCT domain residues 24-143 – NMR
- DNA polymerase nu
- DNA polymerase chi or repair DNA polymerase chi
- DNA polymerase theta
- 5a9j – hDpo helicase domain 1-894
- 5a9f, 5aga – hDpo helicase domain + nucleotide
- 4x0p, 4x0q – hDpo helicase domain + nucleotide + DNA
- 6xbu, 7zus – hDpo polymerase domain 1819-2590 + nucleotide + DNA
- 7zx0, 7zx1, 8e23, 8e24 – hDpo polymerase domain + inhibitor + DNA
- 8ef9, 8efc, 8efk – Dpo polymerase domain + nucleotide + DNA – Lates calcarifer
- 5a9j – hDpo helicase domain 1-894
- DNA polymerase from yeast
- 3oiq - yDpo alpha + cell division control protein 13
- 3flo, 3lgb - yDpo alpha subunits A,B
- 4b08, 4fvm - yDpo alpha subunit A
- 4fxd, 4fyd - yDpo alpha subunit A + RNA + DNA
- 5oki - yDpo alpha subunit A + DCC1 + chromosome fidelity protein
- 3iay - yDpo delta catalytic subunit + DNA
- 6p1h - yDpo delta catalytic+small+3 subunits + DNA + nucleotide – Cryo EM
- 6wjv - yDpo II epsilon – Cryo EM
- 6hv8 - yDpo II epsilon subunit A+B – Cryo EM
- 3oha, 3ohb, 3mfh - yDpo epsilon (mutant) + DNA
- 6i8a, 6qib, 7r3x, 7r3y - yDpo II epsilon subunit A + DNA + nucleotide
- 6g0a, 6fwk, 3mfi, 4m8o - yDpo II epsilon subunit A (mutant) + DNA + nucleotide derivative
- 6s1c, 6s2e, 6s2f - yDpo II epsilon subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins
- 6hv9 - yDpo II epsilon subunit A+B + CMG + DNA + nucleotide – Cryo EM
- 2r8j, 2r8k, 4ptf - yDpo epsilon catalytic domain + DNA + nucleotide
- 6h1v - yDpo epsilon catalytic domain (mutant) + DNA + nucleotide
- 2xgp, 2xgq, 2wtf - yDpo epsilon + DNA
- 7lxd - yDpo eta catalytic+processivity subunits + hDpo d subunits 3+small – Cryo EM
- 7s0t - yDpo eta catalytic+processivity subunits + hDpo d subunits 3+small + DNA – Cryo EM
- 5y27, 5y26 - Dpo epsilon subunit D + transcription factor – fission yeast
- 1jih, 5vtp – yDpo catalytic domain
- 3oiq - yDpo alpha + cell division control protein 13
- DNA polymerase Rev1; Domains – BRCT 44-133; catalytic 330-833; UBM2 998-1040; C-terminal 1158-1251
- 3gqc – hRev1 catalytic domain + DNA + nucleotide
- 2ebw – hRev1 BRCT domain – NMR
- 6axd – hRev1 UBM2 domain – NMR
- 6asr – hRev1 UBM2 domain + ubiquitin
- 5vzm – hRev1 UBM2 domain + ubiquitin - NMR
- 2lsg, 2lsy – hRev1 C-terminal domain – NMR
- 2n1g – hRev1 C-terminal domain + Dpo d subunit 3 – NMR
- 2lsi – hRev1 C-terminal domain + hDpo kappa peptide
- 2lsk – hRev1 C-terminal domain + hDpo kappa peptide
- 4ext – hRev1 C-terminal domain + hDpo eta catalytic subunit peptide + MAD2B
- 4gk5 – hRev1 C-terminal domain + hDpo kappa peptide + hDpo eta catalytic subunit peptide + MAD2B
- 2lsj – mRev1 C-terminal domain + mDpo kappa peptide
- 4fjo – mRev1 C-terminal domain + mDpo kappa peptide + MAD2B
- 4id3, 5umv – yRev1 BRCT domain
- 2m2i, 5vx7 – yRev1 BRCT domain – NMR
- 6x70, 6x72, 6x73, 6x74, 6x76 – yRev1 catalytic domain + DNA
- 3bjy, 2aq4, 3osp, 5wm1, 5wm8, 5wmb, 6x6z, 6x71, 6x75, 6x77 – yRev1 catalytic domain + DNA + nucleotide
- 3gqc – hRev1 catalytic domain + DNA + nucleotide
- Terminal deoxynucleotidyl transferase
- Terminal deoxynucleotidyl transferase binary complex
- 4iqt, 4iqu, 4iqv, 4iqw – mTdT catalytic domain + inhibitor
- 4i2i – mTdT catalytic domain + Mg + Zn + adenosine-pentaphosphate
- 4i2j – mTdT catalytic domain + CTP + Zn
- 1kej – mTdT catalytic domain + ATP derivative + Co
- 4i2d – mTdT catalytic domain + ATP derivative + Mg
- 4i29 – mTdT catalytic domain + AMP derivative + Mn
- 4i2b – mTdT catalytic domain + AMPCPP + Mg
- 4i2c – mTdT catalytic domain + AMPCPP + Mn
- 4i2a – mTdT catalytic domain + UMP derivative + Mg
- 4iqt, 4iqu, 4iqv, 4iqw – mTdT catalytic domain + inhibitor
- Terminal deoxynucleotidyl transferase ternary complex with DNA
- 4i2e – mTdT catalytic domain + AMPCPP + Co + DNA
- 4i2h – mTdT catalytic domain + AMPCPP + Zn + Mg + DNA
- 4i27 – mTdT catalytic domain + TTP derivative + TMP + Mg + DNA
- 1kdh – mTdT catalytic domain + UMP derivative + Mg + DNA
- 4i28, 4i2f – mTdT catalytic domain + Mg + Zn + DNA
- 4i2g – mTdT catalytic domain + Mg + Co + DNA
- 4i2e – mTdT catalytic domain + AMPCPP + Co + DNA